Sequence Similarity Clusters for the Entities in PDB 1M2V

Entity #1 | Chains: A
protein transport protein SEC23 protein, length: 768 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 10056
95 % 3 4 10115 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.9
PDBFlex
90 % 3 4 9992
70 % 3 4 9485
50 % 3 4 8591
40 % 14 26 1926
30 % 14 26 1859
Entity #2 | Chains: B
protein transport protein SEC24 protein, length: 926 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 16380
95 % 1 3 10105
90 % 1 3 9982
70 % 1 3 9475
50 % 1 3 8581
40 % 1 3 7868
30 % 1 3 6952

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures