Sequence Similarity Clusters for the Entities in PDB 1M2V

Entity #1 | Chains: A
protein transport protein SEC23 protein, length: 768 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 10420
95 % 3 4 10427 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.9
PDBFlex
90 % 3 4 10301
70 % 3 4 9769
50 % 3 4 8845
40 % 14 26 1992
30 % 14 26 1923
Entity #2 | Chains: B
protein transport protein SEC24 protein, length: 926 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 16960
95 % 1 3 10416
90 % 1 3 10289
70 % 1 3 9757
50 % 1 3 8833
40 % 1 3 8093
30 % 1 3 7144

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures