Sequence Similarity Clusters for the Entities in PDB 1M2V

Entity #1 | Chains: A
protein transport protein SEC23 protein, length: 768 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 9798
95 % 3 4 9851 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.9
PDBFlex
90 % 3 4 9739
70 % 3 4 9245
50 % 3 4 8374
40 % 14 26 1873
30 % 14 26 1813
Entity #2 | Chains: B
protein transport protein SEC24 protein, length: 926 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 15924
95 % 1 3 9842
90 % 1 3 9730
70 % 1 3 9236
50 % 1 3 8364
40 % 1 3 7674
30 % 1 3 6784

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.