Sequence Similarity Clusters for the Entities in PDB 1M2O

Entity #1 | Chains: A,C
protein transport protein SEC23 protein, length: 768 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 10048
95 % 2 4 10107 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.9
PDBFlex
90 % 2 4 9986
70 % 2 4 9477
50 % 2 4 8582
40 % 11 26 1921
30 % 11 26 1854
Entity #2 | Chains: B,D
GTP-binding protein SAR1 protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 15521
95 % 1 2 14569 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 2 14297
70 % 1 2 13422
50 % 6 7 4539
40 % 6 7 4320
30 % 588 793 16

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.