Sequence Similarity Clusters for the Entities in PDB 1M2O

Entity #1 | Chains: A,C
protein transport protein SEC23 protein, length: 768 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 11556
95 % 2 4 11468 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.9
PDBFlex
90 % 2 4 11312
70 % 2 4 10685
50 % 11 26 2049
40 % 11 26 2025
30 % 11 26 1925
Entity #2 | Chains: B,D
GTP-binding protein SAR1 protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 17126
95 % 1 2 15886 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 2 15547
70 % 1 2 14536
50 % 6 7 4814
40 % 6 7 4531
30 % 627 837 14

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures