Sequence Similarity Clusters for the Entities in PDB 1M2O

Entity #1 | Chains: A,C
protein transport protein SEC23 protein, length: 768 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 10420
95 % 2 4 10427 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.9
PDBFlex
90 % 2 4 10301
70 % 2 4 9769
50 % 2 4 8845
40 % 11 26 1992
30 % 11 26 1923
Entity #2 | Chains: B,D
GTP-binding protein SAR1 protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 16090
95 % 1 2 15037 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 2 14756
70 % 1 2 13830
50 % 6 7 4683
40 % 6 7 4441
30 % 613 822 16

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures