Sequence Similarity Clusters for the Entities in PDB 1M2O

Entity #1 | Chains: A,C
protein transport protein SEC23 protein, length: 768 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 10219
95 % 2 4 10251 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.9
PDBFlex
90 % 2 4 10128
70 % 2 4 9611
50 % 2 4 8706
40 % 11 26 1964
30 % 11 26 1894
Entity #2 | Chains: B,D
GTP-binding protein SAR1 protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 15808
95 % 1 2 14799 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 2 14528
70 % 1 2 13627
50 % 6 7 4614
40 % 6 7 4386
30 % 608 817 16

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures