Sequence Similarity Clusters for the Entities in PDB 1M27

Entity #1 | Chains: A
SH2 domain protein 1A protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 9995
95 % 4 4 10043 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.9
PDBFlex
90 % 4 4 9922
70 % 4 4 9434
50 % 4 4 8534
40 % 110 134 234
30 % 153 231 154
Entity #2 | Chains: B
Signaling lymphocytic activation molecule protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
Proto-oncogene tyrosine-protein kinase FYN protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 13 2417
95 % 7 15 2443 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 0.7
PDBFlex
90 % 7 15 2507
70 % 31 49 754
50 % 35 66 558
40 % 132 286 125
30 % 506 1046 9

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures