Sequence Similarity Clusters for the Entities in PDB 1M27

Entity #1 | Chains: A
SH2 domain protein 1A protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 10170
95 % 4 4 10192 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.9
PDBFlex
90 % 4 4 10068
70 % 4 4 9563
50 % 4 4 8650
40 % 110 134 235
30 % 153 231 154
Entity #2 | Chains: B
Signaling lymphocytic activation molecule protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
Proto-oncogene tyrosine-protein kinase FYN protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 13 2439
95 % 7 15 2477 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 0.7
PDBFlex
90 % 7 15 2538
70 % 31 49 760
50 % 35 66 562
40 % 133 287 126
30 % 518 1062 9

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures