Sequence Similarity Clusters for the Entities in PDB 1M27

Entity #1 | Chains: A
SH2 domain protein 1A protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 9773
95 % 4 4 9853 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.9
PDBFlex
90 % 4 4 9734
70 % 4 4 9260
50 % 4 4 8377
40 % 110 134 226
30 % 153 231 151
Entity #2 | Chains: B
Signaling lymphocytic activation molecule protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
Proto-oncogene tyrosine-protein kinase FYN protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 13 2342
95 % 7 15 2366 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 0.7
PDBFlex
90 % 7 15 2427
70 % 31 49 746
50 % 35 66 547
40 % 131 285 122
30 % 503 1040 9

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.