Sequence Similarity Clusters for the Entities in PDB 1M26

Entity #1 | Chains: A,C,E,G
Jacalin, alpha chain protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 21 456
95 % 7 31 347 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 8 32 356
70 % 9 36 360
50 % 12 49 259
40 % 12 49 273
30 % 23 90 196
Entity #2 | Chains: B,D,F,H
Jacalin, beta chain protein, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.