Sequence Similarity Clusters for the Entities in PDB 1M1Y

Entity #1 | Chains: A,C,I,K
Nitrogenase molybdenum-iron protein alpha chain protein, length: 491 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 16 866
95 % 26 26 771 Flexibility: No
Max RMSD: 2.6, Avg RMSD: 0.4
PDBFlex
90 % 26 26 805
70 % 32 32 688
50 % 32 32 736
40 % 32 32 765
30 % 35 35 665
Entity #2 | Chains: B,D,J,L
Nitrogenase molybdenum-iron protein beta chain protein, length: 522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 24 24 703
95 % 26 26 770 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 26 26 804
70 % 26 26 848
50 % 32 32 735
40 % 32 32 764
30 % 32 32 767
Entity #3 | Chains: E,F,G,H,M,N,O,P
nitrogenase IRON protein 1 protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 12 772
95 % 21 21 669 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.2
PDBFlex
90 % 21 21 698
70 % 21 21 740
50 % 22 22 768
40 % 22 22 809
30 % 22 22 805

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures