Sequence Similarity Clusters for the Entities in PDB 1M1Y

Entity #1 | Chains: A,C,I,K
Nitrogenase molybdenum-iron protein alpha chain protein, length: 491 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 16 808
95 % 25 25 767 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 25 25 794
70 % 31 31 649
50 % 31 31 699
40 % 31 31 730
30 % 33 33 663
Entity #2 | Chains: B,D,J,L
Nitrogenase molybdenum-iron protein beta chain protein, length: 522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 23 23 678
95 % 25 25 766 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 25 25 793
70 % 25 25 840
50 % 31 31 696
40 % 31 31 728
30 % 31 31 721
Entity #3 | Chains: E,F,G,H,M,N,O,P
nitrogenase IRON protein 1 protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 12 724
95 % 21 21 624 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.2
PDBFlex
90 % 21 21 652
70 % 21 21 695
50 % 22 22 712
40 % 22 22 747
30 % 22 22 741

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.