Sequence Similarity Clusters for the Entities in PDB 1M1X

Entity #1 | Chains: A
Integrin alpha-V protein, length: 957 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 11 5660
95 % 9 14 4624 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.3
PDBFlex
90 % 9 14 4651
70 % 9 14 4557
50 % 9 14 4376
40 % 9 14 4169
30 % 10 16 3244
Entity #2 | Chains: B
Integrin beta-3 protein, length: 692 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 16824
95 % 10 16 3718 Flexibility: Medium
Max RMSD: 14.6, Avg RMSD: 5.7
PDBFlex
90 % 10 16 3768
70 % 10 16 3713
50 % 10 16 3607
40 % 12 22 1761
30 % 12 22 1717

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures