Sequence Similarity Clusters for the Entities in PDB 1M1K

Entity #1 | Chains: A
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
RIBOSOMAL PROTEIN L10E protein, length: 167 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 20 2376
95 % 18 20 3008
90 % 18 20 3051
70 % 19 27 2122
50 % 63 74 692
40 % 63 79 677
30 % 63 79 677
Entity #11 | Chains: K
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 63 74 418
95 % 63 74 587
90 % 63 74 617
70 % 63 74 649
50 % 63 74 697
40 % 64 77 700
30 % 64 78 686
Entity #12 | Chains: L
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 44 827
95 % 63 68 661
90 % 63 68 690
70 % 63 68 736
50 % 82 176 200
40 % 82 176 221
30 % 179 510 31
Entity #13 | Chains: M
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 63 74 417
95 % 63 74 586
90 % 63 74 616
70 % 63 74 646
50 % 63 74 693
40 % 63 74 732
30 % 178 492 37
Entity #14 | Chains: N
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 20 2360
95 % 18 20 2987
90 % 18 20 3031
70 % 63 68 728
50 % 83 172 207
40 % 83 172 231
30 % 83 172 236
Entity #15 | Chains: O
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 63 74 415
95 % 63 74 584
90 % 63 74 614
70 % 63 74 643
50 % 63 76 665
40 % 63 76 708
30 % 63 79 675
Entity #16 | Chains: P
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 63 68 470
95 % 63 68 662
90 % 63 68 692
70 % 63 68 738
50 % 63 70 757
40 % 63 70 793
30 % 63 70 784
Entity #17 | Chains: Q
RIBOSOMAL PROTEIN L19E protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 21 2169
95 % 63 68 660
90 % 63 68 688
70 % 63 68 734
50 % 63 68 784
40 % 63 72 759
30 % 63 72 751
Entity #18 | Chains: R
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 63 68 472
95 % 63 68 665
90 % 63 68 694
70 % 63 68 741
50 % 63 70 759
40 % 63 70 795
30 % 63 71 766
Entity #19 | Chains: S
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 62 67 486
95 % 63 68 658
90 % 63 68 686
70 % 63 68 731
50 % 63 68 781
40 % 63 68 816
30 % 82 175 230
Entity #2 | Chains: B
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: T
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 63 74 422
95 % 63 74 590
90 % 63 74 620
70 % 63 74 652
50 % 63 76 669
40 % 63 78 689
30 % 159 399 60
Entity #21 | Chains: U
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 63 74 421
95 % 63 74 589
90 % 63 74 619
70 % 63 74 651
50 % 82 180 196
40 % 82 180 215
30 % 82 180 225
Entity #22 | Chains: V
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 60 70 449
95 % 60 70 632
90 % 60 70 661
70 % 60 70 710
50 % 60 70 760
40 % 60 70 798
30 % 60 70 788
Entity #23 | Chains: W
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 63 74 423
95 % 63 74 591
90 % 63 74 621
70 % 63 74 653
50 % 63 74 698
40 % 63 74 735
30 % 63 74 727
Entity #24 | Chains: X
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 63 68 468
95 % 63 68 659
90 % 63 68 687
70 % 63 68 732
50 % 63 68 782
40 % 63 70 790
30 % 63 71 763
Entity #25 | Chains: Y
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 63 68 474
95 % 63 68 667
90 % 63 68 696
70 % 63 68 743
50 % 63 68 787
40 % 63 68 820
30 % 63 68 809
Entity #26 | Chains: Z
RIBOSOMAL PROTEIN L32E protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 59 63 542
95 % 59 63 753
90 % 59 63 781
70 % 59 63 824
50 % 59 63 866
40 % 59 63 889
30 % 59 63 876
Entity #27 | Chains: 1
RIBOSOMAL PROTEIN L37Ae protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 20 2437
95 % 18 20 3055
90 % 18 20 3097
70 % 19 21 2849
50 % 25 30 1903
40 % 44 129 298
30 % 65 152 267
Entity #28 | Chains: 2
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 63 68 476
95 % 63 68 670
90 % 63 68 699
70 % 63 68 747
50 % 63 69 769
40 % 63 69 809
30 % 63 69 802
Entity #29 | Chains: 3
RIBOSOMAL PROTEIN L39E protein, length: 48 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 20 2442
95 % 63 68 671
90 % 63 68 700
70 % 63 68 748
50 % 82 173 203
40 % 82 173 226
30 % 82 173 233
Entity #3 | Chains: C
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 21 2152
95 % 63 68 654
90 % 63 68 682
70 % 63 68 726
50 % 82 171 206
40 % 82 173 225
30 % 82 173 232
Entity #30 | Chains: 4
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 63 68 473
95 % 63 68 666
90 % 63 68 695
70 % 63 68 742
50 % 63 68 786
40 % 63 68 819
30 % 82 169 240
Entity #4 | Chains: D
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 62 67 483
95 % 63 74 575
90 % 63 74 606
70 % 63 74 639
50 % 63 74 687
40 % 82 180 212
30 % 82 180 222
Entity #5 | Chains: E
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 44 821
95 % 63 74 580
90 % 63 74 612
70 % 63 74 642
50 % 63 74 689
40 % 63 76 706
30 % 64 78 683
Entity #6 | Chains: F
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 63 74 416
95 % 63 74 585
90 % 63 74 615
70 % 63 74 644
50 % 63 74 691
40 % 83 180 214
30 % 83 180 224
Entity #7 | Chains: G
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 63 68 467
95 % 63 68 657
90 % 63 68 685
70 % 63 68 730
50 % 63 68 780
40 % 82 174 224
30 % 179 501 34
Entity #8 | Chains: H
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 21 2180
95 % 19 21 2818
90 % 63 68 691
70 % 63 68 737
50 % 87 105 322
40 % 96 122 278
30 % 96 124 279
Entity #9 | Chains: I
RIBOSOMAL PROTEIN L10 protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 44 815
95 % 60 64 733
90 % 60 64 762
70 % 60 64 803
50 % 60 64 850
40 % 60 64 874
30 % 60 65 849

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.