Sequence Similarity Clusters for the Entities in PDB 1M1K

Entity #1 | Chains: A
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
RIBOSOMAL PROTEIN L10E protein, length: 167 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 20 2550
95 % 18 20 3193 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.1
PDBFlex
90 % 18 20 3240
70 % 19 27 2249
50 % 62 74 752
40 % 62 79 729
30 % 62 79 726
Entity #11 | Chains: K
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 62 74 455
95 % 62 74 629 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 62 74 658
70 % 62 74 702
50 % 62 74 757
40 % 63 77 753
30 % 63 78 744
Entity #12 | Chains: L
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 44 888
95 % 62 68 708 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 62 68 739
70 % 62 68 792
50 % 82 181 204
40 % 181 547 20
30 % 181 547 36
Entity #13 | Chains: M
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 62 74 453
95 % 62 74 628 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 62 74 657
70 % 62 74 700
50 % 62 74 753
40 % 62 74 790
30 % 180 527 39
Entity #14 | Chains: N
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 20 2534
95 % 18 20 3170
90 % 18 20 3218
70 % 62 68 784
50 % 83 177 212
40 % 83 177 231
30 % 83 177 240
Entity #15 | Chains: O
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 62 74 451
95 % 62 74 626 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 62 74 655
70 % 62 74 697
50 % 62 76 728
40 % 62 76 763
30 % 62 79 723
Entity #16 | Chains: P
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 62 68 521
95 % 62 68 710 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 62 68 742
70 % 62 68 795
50 % 62 70 804
40 % 62 70 843
30 % 62 70 826
Entity #17 | Chains: Q
RIBOSOMAL PROTEIN L19E protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 21 2329
95 % 62 68 707 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 62 68 738
70 % 62 68 791
50 % 62 68 835
40 % 62 72 816
30 % 62 72 802
Entity #18 | Chains: R
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 62 68 522
95 % 62 68 712 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 62 68 744
70 % 62 68 797
50 % 62 70 806
40 % 62 70 844
30 % 62 71 813
Entity #19 | Chains: S
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 61 67 533
95 % 62 68 705 Flexibility: No
Max RMSD: 5.1, Avg RMSD: 0.4
PDBFlex
90 % 62 68 736
70 % 62 68 788
50 % 62 68 832
40 % 62 68 867
30 % 82 180 233
Entity #2 | Chains: B
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: T
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 62 74 458
95 % 62 74 632 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 62 74 661
70 % 62 74 706
50 % 62 76 733
40 % 62 78 744
30 % 160 429 61
Entity #21 | Chains: U
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 62 74 457
95 % 62 74 631
90 % 62 74 660
70 % 62 74 704
50 % 82 184 202
40 % 82 185 220
30 % 82 185 229
Entity #22 | Chains: V
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 59 70 491
95 % 59 70 681 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 59 70 708
70 % 59 70 760
50 % 59 70 807
40 % 59 70 845
30 % 59 70 828
Entity #23 | Chains: W
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 62 74 459
95 % 62 74 633 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 62 74 662
70 % 62 74 707
50 % 62 74 758
40 % 157 390 53
30 % 160 416 67
Entity #24 | Chains: X
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 62 68 518
95 % 62 68 706 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 62 68 737
70 % 62 68 789
50 % 62 68 833
40 % 62 70 842
30 % 62 71 811
Entity #25 | Chains: Y
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 62 68 524
95 % 62 68 714 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 62 68 746
70 % 62 68 799
50 % 62 68 840
40 % 62 68 871
30 % 62 68 854
Entity #26 | Chains: Z
RIBOSOMAL PROTEIN L32E protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 58 63 571
95 % 58 63 788 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 58 63 818
70 % 58 63 859
50 % 58 63 912
40 % 58 63 940
30 % 58 63 919
Entity #27 | Chains: 1
RIBOSOMAL PROTEIN L37Ae protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 20 2618
95 % 18 20 3243 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.1
PDBFlex
90 % 18 20 3288
70 % 19 21 3017
50 % 25 30 2014
40 % 45 135 293
30 % 66 158 266
Entity #28 | Chains: 2
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 62 68 525
95 % 62 68 715 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 62 68 747
70 % 62 68 800
50 % 62 69 820
40 % 62 69 855
30 % 62 69 841
Entity #29 | Chains: 3
RIBOSOMAL PROTEIN L39E protein, length: 48 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 20 2623
95 % 62 68 716 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 62 68 748
70 % 62 68 801
50 % 82 178 207
40 % 82 178 228
30 % 82 178 237
Entity #3 | Chains: C
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 21 2311
95 % 62 68 702 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 62 68 732
70 % 62 68 783
50 % 82 176 211
40 % 82 178 226
30 % 82 178 235
Entity #30 | Chains: 4
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 62 68 523
95 % 62 68 713 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 62 68 745
70 % 62 68 798
50 % 62 68 839
40 % 62 68 870
30 % 82 174 245
Entity #4 | Chains: D
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 61 67 529
95 % 62 74 618 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 62 74 649
70 % 62 74 692
50 % 62 74 745
40 % 82 185 218
30 % 82 185 227
Entity #5 | Chains: E
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 41 44 882
95 % 62 74 621 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 62 74 652
70 % 62 74 694
50 % 62 74 747
40 % 62 76 759
30 % 63 78 739
Entity #6 | Chains: F
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 62 74 452
95 % 62 74 627 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 62 74 656
70 % 62 74 698
50 % 62 74 751
40 % 83 185 219
30 % 83 185 228
Entity #7 | Chains: G
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 62 68 517
95 % 62 68 704
90 % 62 68 734
70 % 62 68 786
50 % 62 68 831
40 % 82 179 225
30 % 181 538 38
Entity #8 | Chains: H
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 21 2341
95 % 19 21 2988 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 62 68 741
70 % 62 68 794
50 % 86 105 363
40 % 95 126 285
30 % 95 128 288
Entity #9 | Chains: I
RIBOSOMAL PROTEIN L10 protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 41 44 875
95 % 59 64 762 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 59 64 794
70 % 59 64 836
50 % 59 64 892
40 % 59 64 914
30 % 59 65 888

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.