Sequence Similarity Clusters for the Entities in PDB 1M1J

Entity #1 | Chains: A,D
Fibrinogen alpha subunit protein, length: 491 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 20863
95 % 1 2 18969 Flexibility: Medium
Max RMSD: 4.2, Avg RMSD: 3.3
PDBFlex
90 % 1 2 18455
70 % 1 2 16978
50 % 1 2 15044
40 % 1 2 13404
30 % 1 2 11312
Entity #2 | Chains: B,E
Fibrinogen beta chain protein, length: 464 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 20113
95 % 1 2 18402 Flexibility: Medium
Max RMSD: 4.3, Avg RMSD: 3.5
PDBFlex
90 % 1 2 17918
70 % 1 2 16534
50 % 1 4 7218
40 % 1 4 6664
30 % 1 4 5805
Entity #3 | Chains: C,F
Fibrinogen gamma chain protein, length: 409 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 25016
95 % 1 2 22283 Flexibility: Medium
Max RMSD: 4.7, Avg RMSD: 3.6
PDBFlex
90 % 1 2 21574
70 % 1 2 19674
50 % 1 4 6059
40 % 1 4 5357
30 % 1 5 3752
Entity #4 | Chains: G,H
GLY-PRO-ARG-PRO peptide protein, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: I,J
GLY-HIS-ARG-PRO peptide protein, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures