Sequence Similarity Clusters for the Entities in PDB 1M1J

Entity #1 | Chains: A,D
Fibrinogen alpha subunit protein, length: 491 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 19596
95 % 1 2 17829 Flexibility: Medium
Max RMSD: 4.2, Avg RMSD: 3.3
PDBFlex
90 % 1 2 17387
70 % 1 2 16087
50 % 1 2 14279
40 % 1 2 12751
30 % 1 2 10742
Entity #2 | Chains: B,E
Fibrinogen beta chain protein, length: 464 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 18877
95 % 1 2 17268
90 % 1 2 16862
70 % 1 2 15652
50 % 1 4 6832
40 % 1 4 6324
30 % 1 4 5516
Entity #3 | Chains: C,F
Fibrinogen gamma chain protein, length: 409 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 23548
95 % 1 2 20964 Flexibility: Medium
Max RMSD: 4.7, Avg RMSD: 3.6
PDBFlex
90 % 1 2 20353
70 % 1 2 18659
50 % 1 4 5745
40 % 1 4 5072
30 % 1 5 3569
Entity #4 | Chains: G,H
GLY-PRO-ARG-PRO peptide protein, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: I,J
GLY-HIS-ARG-PRO peptide protein, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures