Sequence Similarity Clusters for the Entities in PDB 1M1J

Entity #1 | Chains: A,D
Fibrinogen alpha subunit protein, length: 491 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 29570
95 % 1 2 14513
90 % 1 2 14249
70 % 1 2 13360
50 % 1 2 11905
40 % 1 2 10789
30 % 1 2 9377
Entity #2 | Chains: B,E
Fibrinogen beta chain protein, length: 464 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 15978
95 % 1 2 14651
90 % 1 2 14377
70 % 1 2 13460
50 % 1 4 5567
40 % 1 4 5216
30 % 1 4 4696
Entity #3 | Chains: C,F
Fibrinogen gamma chain protein, length: 409 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 30803
95 % 1 2 14960
90 % 1 2 14680
70 % 1 2 13726
50 % 1 4 4710
40 % 1 4 4480
30 % 1 5 3221
Entity #4 | Chains: G,H
GLY-PRO-ARG-PRO peptide protein, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: I,J
GLY-HIS-ARG-PRO peptide protein, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.