Sequence Similarity Clusters for the Entities in PDB 1M1J

Entity #1 | Chains: A,D
Fibrinogen alpha subunit protein, length: 491 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 19970
95 % 1 2 18153 Flexibility: Medium
Max RMSD: 4.2, Avg RMSD: 3.3
PDBFlex
90 % 1 2 17698
70 % 1 2 16372
50 % 1 2 14523
40 % 1 2 12939
30 % 1 2 10910
Entity #2 | Chains: B,E
Fibrinogen beta chain protein, length: 464 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 19231
95 % 1 2 17595 Flexibility: Medium
Max RMSD: 4.3, Avg RMSD: 3.5
PDBFlex
90 % 1 2 17170
70 % 1 2 15938
50 % 1 4 6964
40 % 1 4 6444
30 % 1 4 5615
Entity #3 | Chains: C,F
Fibrinogen gamma chain protein, length: 409 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 23963
95 % 1 2 21333 Flexibility: Medium
Max RMSD: 4.7, Avg RMSD: 3.6
PDBFlex
90 % 1 2 20693
70 % 1 2 18973
50 % 1 4 5849
40 % 1 4 5170
30 % 1 5 3631
Entity #4 | Chains: G,H
GLY-PRO-ARG-PRO peptide protein, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: I,J
GLY-HIS-ARG-PRO peptide protein, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures