Sequence Similarity Clusters for the Entities in PDB 1M1J

Entity #1 | Chains: A,D
Fibrinogen alpha subunit protein, length: 491 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 32786
95 % 1 2 16080 Flexibility: Medium
Max RMSD: 4.2, Avg RMSD: 3.3
PDBFlex
90 % 1 2 15786
70 % 1 2 14791
50 % 1 2 13073
40 % 1 2 11826
30 % 1 2 10282
Entity #2 | Chains: B,E
Fibrinogen beta chain protein, length: 464 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 17805
95 % 1 2 16241
90 % 1 2 15936
70 % 1 2 14907
50 % 1 4 6146
40 % 1 4 5745
30 % 1 4 5165
Entity #3 | Chains: C,F
Fibrinogen gamma chain protein, length: 409 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 34169
95 % 1 2 16580 Flexibility: Medium
Max RMSD: 4.7, Avg RMSD: 3.6
PDBFlex
90 % 1 2 16268
70 % 1 2 15188
50 % 1 4 5218
40 % 1 4 4927
30 % 1 5 3496
Entity #4 | Chains: G,H
GLY-PRO-ARG-PRO peptide protein, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: I,J
GLY-HIS-ARG-PRO peptide protein, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures