Sequence Similarity Clusters for the Entities in PDB 1M1D

Entity #1 | Chains: A,C
TGCN5 HISTONE ACETYL TRANSFERASE protein, length: 163 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 9 6735
95 % 7 9 7339 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.9
PDBFlex
90 % 7 9 7304
70 % 7 9 7100
50 % 13 16 1185
40 % 13 16 1197
30 % 13 16 1178
Entity #2 | Chains: B,D
HISTONE H3 protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 15 1801
95 % 17 35 892
90 % 17 35 925
70 % 17 35 954
50 % 17 35 994
40 % 17 35 1018
30 % 17 35 1001

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures