Sequence Similarity Clusters for the Entities in PDB 1M1D

Entity #1 | Chains: A,C
TGCN5 HISTONE ACETYL TRANSFERASE protein, length: 163 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 9 7295
95 % 7 9 7388 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.9
PDBFlex
90 % 7 9 7348
70 % 7 9 7148
50 % 13 16 1221
40 % 13 16 1229
30 % 13 16 1225
Entity #2 | Chains: B,D
HISTONE H3 protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 17 1846
95 % 16 29 1007
90 % 18 36 907
70 % 18 36 937
50 % 18 36 983
40 % 18 36 1000
30 % 18 36 994

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures