Sequence Similarity Clusters for the Entities in PDB 1M1D

Entity #1 | Chains: A,C
TGCN5 HISTONE ACETYL TRANSFERASE protein, length: 163 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 9 6387
95 % 7 9 6956 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.0
PDBFlex
90 % 7 9 6927
70 % 7 9 6722
50 % 12 14 3577
40 % 12 14 3450
30 % 12 14 3226
Entity #2 | Chains: B,D
HISTONE H3 protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 15 1693
95 % 17 34 869
90 % 17 34 904
70 % 17 34 938
50 % 17 34 982
40 % 17 34 1000
30 % 17 34 974

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.