Sequence Similarity Clusters for the Entities in PDB 1M1A

Entity #1 | Chains: I,J
Palindromic 146 Base Pair DNA Fragment dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,E
Histone H3.2 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 12695
95 % 56 142 98
90 % 56 145 83
70 % 56 146 101
50 % 57 149 133
40 % 57 149 151
30 % 57 149 168
Entity #3 | Chains: B,F
Histone H4 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 54 133 81
95 % 60 152 71
90 % 61 157 73
70 % 61 157 86
50 % 61 157 124
40 % 61 157 141
30 % 61 157 157
Entity #4 | Chains: C,G
Histone H2A.1 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 70 161
95 % 48 128 110
90 % 51 139 87
70 % 53 145 94
50 % 58 155 120
40 % 58 155 139
30 % 58 155 154
Entity #5 | Chains: D,H
Histone H2B.1 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 52 224
95 % 48 127 114
90 % 48 132 113
70 % 51 139 120
50 % 51 139 145
40 % 51 139 161
30 % 51 139 179

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.