Sequence Similarity Clusters for the Entities in PDB 1M1A

Entity #1 | Chains: I,J
Palindromic 146 Base Pair DNA Fragment dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,E
Histone H3.2 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 12893
95 % 58 147 80
90 % 58 150 79
70 % 58 151 98
50 % 59 154 134
40 % 59 154 149
30 % 59 154 165
Entity #3 | Chains: B,F
Histone H4 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 138 77
95 % 62 157 73
90 % 63 162 73
70 % 63 162 87
50 % 63 162 123
40 % 63 162 140
30 % 63 162 156
Entity #4 | Chains: C,G
Histone H2A.1 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 72 166
95 % 50 133 110
90 % 53 144 83
70 % 55 150 93
50 % 60 160 120
40 % 60 160 138
30 % 60 160 153
Entity #5 | Chains: D,H
Histone H2B.1 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 54 227
95 % 50 132 113
90 % 50 137 111
70 % 53 144 106
50 % 53 144 143
40 % 53 144 159
30 % 53 144 178

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.