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An Information Portal to 110071 Biological Macromolecular Structures

LIGAND BINDING ALTERS THE STRUCTURE AND DYNAMICS OF NUCLEOSOMAL DNA
Sequence Clustering and Redundancy Reduction Results
1M19
Sequence Clusters for the Sequence Entities in PDB 1M19
Entity #1: Chains: I,J - Palindromic 146 Base Pair DNA Fragment dna, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: A,E - Histone H3.2 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 10686
95% 14 98 124
90% 14 101 131
70% 14 101 148
50% 14 104 174
40% 14 104 192
30% 14 104 208
Entity #3: Chains: B,F - Histone H4 protein, length: 102 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 87 101
95% 15 103 122
90% 15 107 124
70% 15 107 139
50% 15 107 164
40% 15 107 181
30% 15 107 197
Entity #4: Chains: C,G - Histone H2A.1 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 56 172
95% 9 86 135
90% 10 92 133
70% 10 95 149
50% 11 101 165
40% 11 101 182
30% 11 101 199
Entity #5: Chains: D,H - Histone H2B.1 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 42 245
95% 9 86 136
90% 9 88 145
70% 9 94 153
50% 9 94 186
40% 9 94 202
30% 9 94 217
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.