Sequence Similarity Clusters for the Entities in PDB 1M19

Entity #1 | Chains: I,J
Palindromic 146 Base Pair DNA Fragment dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,E
Histone H3.2 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 12874
95 % 21 147 80
90 % 21 150 78
70 % 21 151 97
50 % 21 154 134
40 % 21 154 149
30 % 21 154 165
Entity #3 | Chains: B,F
Histone H4 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 138 77
95 % 22 157 73
90 % 22 162 73
70 % 22 162 87
50 % 22 162 123
40 % 22 162 140
30 % 22 162 155
Entity #4 | Chains: C,G
Histone H2A.1 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 72 166
95 % 16 133 110
90 % 17 144 83
70 % 18 150 93
50 % 20 160 120
40 % 20 160 138
30 % 20 160 153
Entity #5 | Chains: D,H
Histone H2B.1 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 54 227
95 % 16 132 113
90 % 16 137 111
70 % 16 144 106
50 % 16 144 143
40 % 16 144 159
30 % 16 144 178

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.