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An Information Portal to 108263 Biological Macromolecular Structures

LIGAND BINDING ALTERS THE STRUCTURE AND DYNAMICS OF NUCLEOSOMAL DNA
Sequence Clustering and Redundancy Reduction Results
1M19
Sequence Clusters for the Sequence Entities in PDB 1M19
Entity #1: Chains: I,J - Palindromic 146 Base Pair DNA Fragment dna, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: A,E - Histone H3.2 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 10483
95% 14 98 98
90% 14 101 104
70% 14 101 123
50% 14 104 159
40% 14 104 181
30% 14 104 199
Entity #3: Chains: B,F - Histone H4 protein, length: 102 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 84 92
95% 14 100 96
90% 14 104 97
70% 14 104 115
50% 14 104 153
40% 14 104 176
30% 14 104 194
Entity #4: Chains: C,G - Histone H2A.1 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 56 164
95% 9 86 129
90% 10 92 107
70% 10 95 124
50% 11 101 150
40% 11 101 174
30% 11 101 191
Entity #5: Chains: D,H - Histone H2B.1 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 42 242
95% 9 86 131
90% 9 88 137
70% 9 94 128
50% 9 94 173
40% 9 94 194
30% 9 94 209
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.