Sequence Similarity Clusters for the Entities in PDB 1M19

Entity #1 | Chains: I,J
Palindromic 146 Base Pair DNA Fragment dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,E
Histone H3.2 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 11768
95 % 18 126 106
90 % 18 129 107
70 % 18 130 122
50 % 18 133 145
40 % 18 133 161
30 % 18 133 179
Entity #3 | Chains: B,F
Histone H4 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 117 89
95 % 19 135 99
90 % 19 140 84
70 % 19 140 98
50 % 19 140 134
40 % 19 140 146
30 % 19 140 167
Entity #4 | Chains: C,G
Histone H2A.1 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 66 133
95 % 13 115 115
90 % 14 124 109
70 % 15 128 117
50 % 16 135 133
40 % 16 135 145
30 % 16 135 165
Entity #5 | Chains: D,H
Histone H2B.1 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 49 227
95 % 13 114 118
90 % 13 117 119
70 % 13 123 129
50 % 13 123 155
40 % 13 123 171
30 % 13 123 186

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.