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An Information Portal to 110790 Biological Macromolecular Structures

LIGAND BINDING ALTERS THE STRUCTURE AND DYNAMICS OF NUCLEOSOMAL DNA
Sequence Clustering and Redundancy Reduction Results
1M19
Sequence Clusters for the Sequence Entities in PDB 1M19
Entity #1: Chains: I,J - Palindromic 146 Base Pair DNA Fragment dna, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: A,E - Histone H3.2 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 10784
95% 14 100 123
90% 14 103 127
70% 14 103 144
50% 14 106 166
40% 14 106 183
30% 14 106 198
Entity #3: Chains: B,F - Histone H4 protein, length: 102 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 90 96
95% 15 107 118
90% 15 111 114
70% 15 111 129
50% 15 111 155
40% 15 111 172
30% 15 111 187
Entity #4: Chains: C,G - Histone H2A.1 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 56 173
95% 9 86 136
90% 10 93 132
70% 10 96 149
50% 11 102 167
40% 11 102 184
30% 11 102 199
Entity #5: Chains: D,H - Histone H2B.1 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 42 248
95% 9 86 137
90% 9 88 146
70% 9 95 152
50% 9 95 184
40% 9 95 201
30% 9 95 217
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.