Sequence Similarity Clusters for the Entities in PDB 1M18

Entity #1 | Chains: I,J
Palindromic 146 Base Pair DNA Fragment dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,E
Histone H3.2 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 12578
95 % 34 137 105
90 % 34 140 105
70 % 34 141 116
50 % 34 144 140
40 % 34 144 157
30 % 34 144 173
Entity #3 | Chains: B,F
Histone H4 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 128 86
95 % 36 147 78
90 % 36 152 74
70 % 36 152 91
50 % 36 152 128
40 % 36 152 146
30 % 36 152 160
Entity #4 | Chains: C,G
Histone H2A.1 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 70 161
95 % 26 125 111
90 % 28 134 107
70 % 29 140 99
50 % 34 150 124
40 % 34 150 141
30 % 34 150 155
Entity #5 | Chains: D,H
Histone H2B.1 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 52 223
95 % 27 124 116
90 % 27 127 116
70 % 28 134 124
50 % 28 134 154
40 % 28 134 170
30 % 28 134 186

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.