Sequence Similarity Clusters for the Entities in PDB 1M18

Entity #1 | Chains: I,J
Palindromic 146 Base Pair DNA Fragment dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,E
Histone H3.2 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 13430
95 % 38 151 76
90 % 38 154 78
70 % 38 155 93
50 % 38 158 128
40 % 38 158 145
30 % 38 158 160
Entity #3 | Chains: B,F
Histone H4 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 142 62
95 % 40 161 74
90 % 40 166 73
70 % 40 166 86
50 % 40 166 122
40 % 40 166 140
30 % 40 166 154
Entity #4 | Chains: C,G
Histone H2A.1 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 75 164
95 % 31 141 81
90 % 32 149 79
70 % 33 155 89
50 % 38 165 116
40 % 38 165 138
30 % 38 165 150
Entity #5 | Chains: D,H
Histone H2B.1 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 56 217
95 % 31 136 108
90 % 31 141 91
70 % 32 148 100
50 % 32 148 139
40 % 32 148 156
30 % 32 148 172

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.