Sequence Similarity Clusters for the Entities in PDB 1M11

Entity #1 | Chains: R
decay-accelerating factor protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 9 2683
95 % 9 9 3372
90 % 9 9 3419
70 % 9 9 3368
50 % 9 9 3302
40 % 9 9 3205
30 % 9 9 2991
Entity #2 | Chains: 1
COAT PROTEIN VP1 protein, length: 278 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 25390
95 % 3 3 21292
90 % 3 3 20705
70 % 7 7 9245
50 % 13 14 4228
40 % 116 148 283
30 % 116 148 287
Entity #3 | Chains: 2
COAT PROTEIN VP2 protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55689
95 % 3 3 21547
90 % 3 3 20946
70 % 14 15 4136
50 % 118 150 302
40 % 118 150 318
30 % 143 178 170
Entity #4 | Chains: 3
COAT PROTEIN VP3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56462
95 % 3 3 21739
90 % 3 3 21120
70 % 14 15 4145
50 % 82 114 433
40 % 127 159 263
30 % 154 189 154

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.