Sequence Similarity Clusters for the Entities in PDB 1M11

Entity #1 | Chains: R
decay-accelerating factor protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 9 2919
95 % 9 9 3620
90 % 9 9 3672
70 % 9 9 3625
50 % 9 9 3529
40 % 9 9 3402
30 % 9 9 3182
Entity #2 | Chains: 1
COAT PROTEIN VP1 protein, length: 278 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 27248
95 % 3 3 22816
90 % 3 3 22143
70 % 7 7 9899
50 % 13 14 4546
40 % 128 160 278
30 % 128 160 290
Entity #3 | Chains: 2
COAT PROTEIN VP2 protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59329
95 % 3 3 23087
90 % 3 3 22399
70 % 14 15 4460
50 % 128 160 320
40 % 128 160 333
30 % 160 195 168
Entity #4 | Chains: 3
COAT PROTEIN VP3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60141
95 % 3 3 23292
90 % 3 3 22580
70 % 14 15 4470
50 % 137 169 247
40 % 139 171 262
30 % 175 210 151

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures