Sequence Similarity Clusters for the Entities in PDB 1M11

Entity #1 | Chains: R
decay-accelerating factor protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 9 2952
95 % 9 9 3658
90 % 9 9 3720
70 % 9 9 3669
50 % 9 9 3576
40 % 9 9 3445
30 % 9 9 3223
Entity #2 | Chains: 1
COAT PROTEIN VP1 protein, length: 278 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 27605
95 % 3 3 23110
90 % 3 3 22420
70 % 7 7 10047
50 % 13 14 4604
40 % 128 160 279
30 % 128 160 293
Entity #3 | Chains: 2
COAT PROTEIN VP2 protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60021
95 % 3 3 23382
90 % 3 3 22677
70 % 14 15 4519
50 % 128 160 338
40 % 128 160 353
30 % 160 195 169
Entity #4 | Chains: 3
COAT PROTEIN VP3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60845
95 % 3 3 23587
90 % 3 3 22861
70 % 14 15 4529
50 % 137 169 247
40 % 139 171 262
30 % 175 210 153

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures