Sequence Similarity Clusters for the Entities in PDB 1M11

Entity #1 | Chains: R
decay-accelerating factor protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 9 2767
95 % 9 9 3464
90 % 9 9 3512
70 % 9 9 3460
50 % 9 9 3392
40 % 9 9 3283
30 % 9 9 3065
Entity #2 | Chains: 1
COAT PROTEIN VP1 protein, length: 278 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 26225
95 % 3 3 22006
90 % 3 3 21376
70 % 7 7 9563
50 % 13 14 4374
40 % 123 155 276
30 % 123 155 284
Entity #3 | Chains: 2
COAT PROTEIN VP2 protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57259
95 % 3 3 22266
90 % 3 3 21624
70 % 14 15 4290
50 % 125 157 297
40 % 125 157 311
30 % 157 192 165
Entity #4 | Chains: 3
COAT PROTEIN VP3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58042
95 % 3 3 22464
90 % 3 3 21803
70 % 14 15 4300
50 % 132 164 242
40 % 134 166 260
30 % 168 203 150

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.