Sequence Similarity Clusters for the Entities in PDB 1M11

Entity #1 | Chains: R
decay-accelerating factor protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 9 2831
95 % 9 9 3525
90 % 9 9 3575
70 % 9 9 3528
50 % 9 9 3446
40 % 9 9 3332
30 % 9 9 3112
Entity #2 | Chains: 1
COAT PROTEIN VP1 protein, length: 278 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 26645
95 % 3 3 22353
90 % 3 3 21713
70 % 7 7 9697
50 % 13 14 4444
40 % 127 159 276
30 % 127 159 285
Entity #3 | Chains: 2
COAT PROTEIN VP2 protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58174
95 % 3 3 22622
90 % 3 3 21967
70 % 14 15 4365
50 % 127 159 306
40 % 127 159 317
30 % 159 194 165
Entity #4 | Chains: 3
COAT PROTEIN VP3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58973
95 % 3 3 22820
90 % 3 3 22143
70 % 14 15 4375
50 % 136 168 243
40 % 138 170 260
30 % 174 209 148

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.