Sequence Similarity Clusters for the Entities in PDB 1M0F

Entity #1 | Chains: 1,2,3,4
Scaffolding protein D protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 4769
95 % 4 4 5090
90 % 4 4 5117
70 % 4 4 4990
50 % 4 4 4880
40 % 4 4 4600
30 % 4 4 4140
Entity #2 | Chains: F
Capsid Protein F protein, length: 431 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 25903
95 % 3 3 22838
90 % 3 3 22105
70 % 6 7 10127
50 % 7 8 8462
40 % 7 8 7710
30 % 7 8 6683
Entity #3 | Chains: G
Major Spike Protein G protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 25902
95 % 3 3 22837
90 % 3 3 22104
70 % 3 3 20184
50 % 3 3 17401
40 % 3 3 15383
30 % 7 7 7009
Entity #4 | Chains: B
Scaffolding Protein B protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 49692
95 % 1 1 41143
90 % 1 1 39196
70 % 1 1 34655
50 % 1 1 29448
40 % 1 1 25809
30 % 1 1 21509

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures