Sequence Similarity Clusters for the Entities in PDB 1M0F

Entity #1 | Chains: 1,2,3,4
Scaffolding protein D protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 4196
95 % 4 4 4991
90 % 4 4 5011
70 % 4 4 4883
50 % 4 4 4676
40 % 4 4 4441
30 % 4 4 4074
Entity #2 | Chains: F
Capsid Protein F protein, length: 431 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 26204
95 % 3 3 22177
90 % 3 3 21530
70 % 6 6 10846
50 % 7 7 8819
40 % 7 7 8086
30 % 7 7 7140
Entity #3 | Chains: G
Major Spike Protein G protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 28809
95 % 3 3 23930
90 % 3 3 23121
70 % 3 3 21083
50 % 3 3 18238
40 % 3 3 16248
30 % 7 7 7393
Entity #4 | Chains: B
Scaffolding Protein B protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 73637
95 % 1 1 51048
90 % 1 1 48396
70 % 1 1 42423
50 % 1 1 36149
40 % 1 1 31824
30 % 1 1 26848

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures