Sequence Similarity Clusters for the Entities in PDB 1M0F

Entity #1 | Chains: 1,2,3,4
Scaffolding protein D protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 4084
95 % 4 4 4858
90 % 4 4 4877
70 % 4 4 4759
50 % 4 4 4566
40 % 4 4 4338
30 % 4 4 3987
Entity #2 | Chains: F
Capsid Protein F protein, length: 431 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 25583
95 % 3 3 21703
90 % 3 3 21091
70 % 6 6 10613
50 % 7 7 8636
40 % 7 7 7914
30 % 7 7 6997
Entity #3 | Chains: G
Major Spike Protein G protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 28156
95 % 3 3 23416
90 % 3 3 22648
70 % 3 3 20667
50 % 3 3 17891
40 % 3 3 15951
30 % 7 7 7240
Entity #4 | Chains: B
Scaffolding Protein B protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 72211
95 % 1 1 50148
90 % 1 1 47588
70 % 1 1 41748
50 % 1 1 35598
40 % 1 1 31354
30 % 1 1 26464

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.