Sequence Similarity Clusters for the Entities in PDB 1M0F

Entity #1 | Chains: 1,2,3,4
Scaffolding protein D protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 3911
95 % 4 4 4672
90 % 4 4 4692
70 % 4 4 4598
50 % 4 4 4425
40 % 4 4 4202
30 % 4 4 3860
Entity #2 | Chains: F
Capsid Protein F protein, length: 431 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 24775
95 % 3 3 21012
90 % 3 3 20427
70 % 6 6 10277
50 % 7 7 8384
40 % 7 7 7690
30 % 7 7 6795
Entity #3 | Chains: G
Major Spike Protein G protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 27273
95 % 3 3 22690
90 % 3 3 21957
70 % 3 3 20112
50 % 3 3 17444
40 % 3 3 15553
30 % 7 7 7023
Entity #4 | Chains: B
Scaffolding Protein B protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 70181
95 % 1 1 48689
90 % 1 1 46252
70 % 1 1 40726
50 % 1 1 34809
40 % 1 1 30670
30 % 1 1 25877

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.