Sequence Similarity Clusters for the Entities in PDB 1M0F

Entity #1 | Chains: 1,2,3,4
Scaffolding protein D protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 3842
95 % 4 4 4592
90 % 4 4 4605
70 % 4 4 4501
50 % 4 4 4349
40 % 4 4 4145
30 % 4 4 3805
Entity #2 | Chains: F
Capsid Protein F protein, length: 431 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 24388
95 % 3 3 20683
90 % 3 3 20118
70 % 6 6 10108
50 % 7 7 8264
40 % 7 7 7573
30 % 7 7 6690
Entity #3 | Chains: G
Major Spike Protein G protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 26864
95 % 3 3 22343
90 % 3 3 21630
70 % 3 3 19838
50 % 3 3 17219
40 % 3 3 15358
30 % 7 7 6915
Entity #4 | Chains: B
Scaffolding Protein B protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 69278
95 % 1 1 48041
90 % 1 1 45665
70 % 1 1 40222
50 % 1 1 34403
40 % 1 1 30311
30 % 1 1 25566

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.