Sequence Similarity Clusters for the Entities in PDB 1M0F

Entity #1 | Chains: 1,2,3,4
Scaffolding protein D protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 3990
95 % 4 4 4765
90 % 4 4 4781
70 % 4 4 4689
50 % 4 4 4510
40 % 4 4 4282
30 % 4 4 3936
Entity #2 | Chains: F
Capsid Protein F protein, length: 431 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 25258
95 % 3 3 21432
90 % 3 3 20825
70 % 6 6 10488
50 % 7 7 8541
40 % 7 7 7826
30 % 7 7 6918
Entity #3 | Chains: G
Major Spike Protein G protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 27787
95 % 3 3 23117
90 % 3 3 22366
70 % 3 3 20422
50 % 3 3 17691
40 % 3 3 15774
30 % 7 7 7157
Entity #4 | Chains: B
Scaffolding Protein B protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71271
95 % 1 1 49489
90 % 1 1 46985
70 % 1 1 41293
50 % 1 1 35236
40 % 1 1 31031
30 % 1 1 26179

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.