Sequence Similarity Clusters for the Entities in PDB 1M0F

Entity #1 | Chains: 1,2,3,4
Scaffolding protein D protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 4267
95 % 4 4 5068
90 % 4 4 5092
70 % 4 4 4962
50 % 4 4 4743
40 % 4 4 4492
30 % 4 4 4132
Entity #2 | Chains: F
Capsid Protein F protein, length: 431 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 26599
95 % 3 3 22500
90 % 3 3 21834
70 % 6 6 11007
50 % 7 7 8954
40 % 7 7 8201
30 % 7 7 7238
Entity #3 | Chains: G
Major Spike Protein G protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 29207
95 % 3 3 24258
90 % 3 3 23433
70 % 3 3 21350
50 % 3 3 18451
40 % 3 3 16435
30 % 7 7 7495
Entity #4 | Chains: B
Scaffolding Protein B protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 74556
95 % 1 1 51673
90 % 1 1 48968
70 % 1 1 42906
50 % 1 1 36554
40 % 1 1 32184
30 % 1 1 27156

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures