Sequence Similarity Clusters for the Entities in PDB 1M06

Entity #1 | Chains: F
Capsid Protein protein, length: 431 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 25367
95 % 1 3 21535 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 3 20924
70 % 2 6 10534
50 % 2 7 8570
40 % 2 7 7854
30 % 2 7 6946
Entity #2 | Chains: G
Major spike protein protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 27921
95 % 1 3 23237
90 % 1 3 22478
70 % 1 3 20520
50 % 1 3 17773
40 % 1 3 15843
30 % 2 7 7187
Entity #3 | Chains: J
Small core protein protein, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 74272
95 % 1 1 51909
90 % 1 1 49271
70 % 1 1 43164
50 % 1 1 36854
40 % 1 1 32526
30 % 1 1 27623
Entity #4 | Chains: X
5'-D(P*(3DR)P*(3DR)P*(3DR)P*(3DR)P*(3DR)P*(3DR)P*(3DR)P*(3DR)P*(3DR)P*(3DR))-3' dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.