Sequence Similarity Clusters for the Entities in PDB 1M06

Entity #1 | Chains: F
Capsid Protein protein, length: 431 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 23359
95 % 1 3 19820
90 % 1 3 19285
70 % 2 6 9698
50 % 2 7 7940
40 % 2 7 7304
30 % 2 7 6471
Entity #2 | Chains: G
Major spike protein protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 25703
95 % 1 3 21386
90 % 1 3 20708
70 % 1 3 19008
50 % 1 3 16527
40 % 1 3 14754
30 % 2 7 6691
Entity #3 | Chains: J
Small core protein protein, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 69226
95 % 1 1 48323
90 % 1 1 45971
70 % 1 1 40502
50 % 1 1 34723
40 % 1 1 30663
30 % 1 1 26029
Entity #4 | Chains: X
5'-D(P*(3DR)P*(3DR)P*(3DR)P*(3DR)P*(3DR)P*(3DR)P*(3DR)P*(3DR)P*(3DR)P*(3DR))-3' dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.