Sequence Similarity Clusters for the Entities in PDB 1M06

Entity #1 | Chains: F
Capsid Protein protein, length: 431 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 24958
95 % 1 3 21158 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 3 20565
70 % 2 6 10357
50 % 2 7 8454
40 % 2 7 7752
30 % 2 7 6853
Entity #2 | Chains: G
Major spike protein protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 27470
95 % 1 3 22840 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 3 22100
70 % 1 3 20235
50 % 1 3 17546
40 % 1 3 15646
30 % 2 7 7078
Entity #3 | Chains: J
Small core protein protein, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 73184
95 % 1 1 51075
90 % 1 1 48492
70 % 1 1 42599
50 % 1 1 36457
40 % 1 1 32194
30 % 1 1 27342
Entity #4 | Chains: X
5'-D(P*(3DR)P*(3DR)P*(3DR)P*(3DR)P*(3DR)P*(3DR)P*(3DR)P*(3DR)P*(3DR)P*(3DR))-3' dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.