Sequence Similarity Clusters for the Entities in PDB 1M06

Entity #1 | Chains: F
Capsid Protein protein, length: 431 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 25903
95 % 1 3 22838 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 3 22105
70 % 2 7 10127
50 % 2 8 8462
40 % 2 8 7710
30 % 2 8 6683
Entity #2 | Chains: G
Major spike protein protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 25902
95 % 1 3 22837 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 3 22104
70 % 1 3 20184
50 % 1 3 17401
40 % 1 3 15383
30 % 2 7 7009
Entity #3 | Chains: J
Small core protein protein, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48920
95 % 1 1 40540
90 % 1 1 38626
70 % 1 2 24066
50 % 1 2 20636
40 % 1 2 18211
30 % 1 2 15277
Entity #4 | Chains: X
5'-D(P*(3DR)P*(3DR)P*(3DR)P*(3DR)P*(3DR)P*(3DR)P*(3DR)P*(3DR)P*(3DR)P*(3DR))-3' dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures