Sequence Similarity Clusters for the Entities in PDB 1M06

Entity #1 | Chains: F
Capsid Protein protein, length: 431 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 25715
95 % 1 3 21813 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 3 21192
70 % 2 6 10665
50 % 2 7 8680
40 % 2 7 7956
30 % 2 7 7034
Entity #2 | Chains: G
Major spike protein protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 28304
95 % 1 3 23553 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 3 22771
70 % 1 3 20774
50 % 1 3 17978
40 % 1 3 16027
30 % 2 7 7278
Entity #3 | Chains: J
Small core protein protein, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 75254
95 % 1 1 52566
90 % 1 1 49852
70 % 1 1 43629
50 % 1 1 37242
40 % 1 1 32861
30 % 1 1 27913
Entity #4 | Chains: X
5'-D(P*(3DR)P*(3DR)P*(3DR)P*(3DR)P*(3DR)P*(3DR)P*(3DR)P*(3DR)P*(3DR)P*(3DR))-3' dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures