Sequence Similarity Clusters for the Entities in PDB 1M05

Entity #1 | Chains: A,C
HLA class I histocompatibility antigen, B-8 B*0801 alpha chain protein, length: 277 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 16 2258
95 % 93 138 225
90 % 132 204 136
70 % 322 732 6
50 % 323 737 7
40 % 340 788 10
30 % 367 919 15
Entity #2 | Chains: B,D
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 299 632 2
95 % 326 676 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 328 685 4
70 % 388 936 4
50 % 394 958 3
40 % 394 958 7
30 % 394 958 12
Entity #3 | Chains: E,F
EBNA-3 nuclear protein protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures