Sequence Similarity Clusters for the Entities in PDB 1M05

Entity #1 | Chains: A,C
HLA class I histocompatibility antigen, B-8 B*0801 alpha chain protein, length: 277 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 16 2233
95 % 91 135 230
90 % 130 201 138
70 % 320 727 6
50 % 321 732 6
40 % 338 783 10
30 % 365 909 15
Entity #2 | Chains: B,D
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 296 624 2
95 % 323 668 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 325 677 4
70 % 385 924 4
50 % 391 946 3
40 % 391 946 7
30 % 391 946 12
Entity #3 | Chains: E,F
EBNA-3 nuclear protein protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures