Sequence Similarity Clusters for the Entities in PDB 1M05

Entity #1 | Chains: A,C
HLA class I histocompatibility antigen, B-8 B*0801 alpha chain protein, length: 277 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 16 2060
95 % 89 133 215 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 127 195 140
70 % 303 679 6
50 % 304 684 6
40 % 320 734 10
30 % 342 851 15
Entity #2 | Chains: B,D
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 281 588 2
95 % 308 631 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 310 640 4
70 % 366 870 4
50 % 372 892 4
40 % 372 892 8
30 % 372 892 14
Entity #3 | Chains: E,F
EBNA-3 nuclear protein protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.