Sequence Similarity Clusters for the Entities in PDB 1M05

Entity #1 | Chains: A,C
HLA class I histocompatibility antigen, B-8 B*0801 alpha chain protein, length: 277 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 16 2182
95 % 91 135 226
90 % 130 201 135
70 % 317 719 6
50 % 318 724 6
40 % 335 775 10
30 % 362 899 15
Entity #2 | Chains: B,D
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 295 618 2
95 % 322 662 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 324 671 4
70 % 384 916 4
50 % 390 938 3
40 % 390 938 7
30 % 390 938 12
Entity #3 | Chains: E,F
EBNA-3 nuclear protein protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures