Sequence Similarity Clusters for the Entities in PDB 1M05

Entity #1 | Chains: A,C
HLA class I histocompatibility antigen, B-8 B*0801 alpha chain protein, length: 277 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 16 2103
95 % 90 134 216 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 129 199 132
70 % 308 687 6
50 % 309 692 6
40 % 325 742 10
30 % 347 859 15
Entity #2 | Chains: B,D
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 286 596 2
95 % 313 639 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 315 648 4
70 % 371 878 4
50 % 377 900 3
40 % 377 900 8
30 % 377 900 14
Entity #3 | Chains: E,F
EBNA-3 nuclear protein protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.