Sequence Similarity Clusters for the Entities in PDB 1LZW

Entity #1 | Chains: A
Protein yljA protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 38016
95 % 10 12 2628 Flexibility: Low
Max RMSD: 13.2, Avg RMSD: 1.3
PDBFlex
90 % 10 12 2700
70 % 10 12 2676
50 % 10 12 2648
40 % 10 12 2586
30 % 10 12 2420
Entity #2 | Chains: B
ATP-dependent clp protease ATP-binding subunit ClpA protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 4956
95 % 8 9 5257 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.8
PDBFlex
90 % 8 9 5288
70 % 8 9 5158
50 % 8 9 4917
40 % 8 9 4620
30 % 8 9 4158

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures