Sequence Similarity Clusters for the Entities in PDB 1LYW

Entity #1 | Chains: A,C,E,G
CATHEPSIN D protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 4610
95 % 4 6 5417 Flexibility: Medium
Max RMSD: 6.2, Avg RMSD: 3.2
PDBFlex
90 % 4 6 5443
70 % 4 6 5345
50 % 4 6 5098
40 % 4 6 4818
30 % 4 6 4407
Entity #2 | Chains: B,D,F,H
CATHEPSIN D protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 4518
95 % 4 6 5319 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.1
PDBFlex
90 % 4 6 5347
70 % 4 6 5239
50 % 4 6 4995
40 % 4 6 4717
30 % 4 6 4320

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures