Sequence Similarity Clusters for the Entities in PDB 1LYW

Entity #1 | Chains: A,C,E,G
CATHEPSIN D protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 6 4022
95 % 4 6 4769
90 % 4 6 4789
70 % 4 6 4729
50 % 4 6 4545
40 % 4 6 4326
30 % 4 6 3964
Entity #2 | Chains: B,D,F,H
CATHEPSIN D protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 6 3945
95 % 4 6 4680
90 % 4 6 4696
70 % 4 6 4623
50 % 4 6 4450
40 % 4 6 4233
30 % 4 6 3887

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.