Sequence Similarity Clusters for the Entities in PDB 1LYW

Entity #1 | Chains: A,C,E,G
CATHEPSIN D protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 4226
95 % 4 6 5009 Flexibility: Medium
Max RMSD: 6.2, Avg RMSD: 3.3
PDBFlex
90 % 4 6 5023
70 % 4 6 4967
50 % 4 6 4764
40 % 4 6 4514
30 % 4 6 4131
Entity #2 | Chains: B,D,F,H
CATHEPSIN D protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 4141
95 % 4 6 4915 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.2
PDBFlex
90 % 4 6 4934
70 % 4 6 4861
50 % 4 6 4667
40 % 4 6 4418
30 % 4 6 4051

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.