Sequence Similarity Clusters for the Entities in PDB 1LYW

Entity #1 | Chains: A,C,E,G
CATHEPSIN D protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 4491
95 % 4 6 5293 Flexibility: Medium
Max RMSD: 6.2, Avg RMSD: 3.2
PDBFlex
90 % 4 6 5312
70 % 4 6 5225
50 % 4 6 4997
40 % 4 6 4730
30 % 4 6 4322
Entity #2 | Chains: B,D,F,H
CATHEPSIN D protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 4401
95 % 4 6 5196 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.1
PDBFlex
90 % 4 6 5219
70 % 4 6 5116
50 % 4 6 4892
40 % 4 6 4626
30 % 4 6 4233

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures