Sequence Similarity Clusters for the Entities in PDB 1LYN

Entity #1 | Chains: A,B
SPERM LYSIN protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 10 2181
95 % 10 11 2328 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 0.9
PDBFlex
90 % 10 11 2395
70 % 10 11 2396
50 % 11 12 2178
40 % 11 12 2172
30 % 11 12 2089

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5II8 1 A Egg-lysin UNP residues 19-154 6454
2 2LIS 1 A SPERM LYSIN 6454
3 5II7 1 A Egg-lysin 6454
4 5IIB 1 A Egg-lysin 6454
5 5IIA 1 A, C, E, G Egg-lysin 6454
6 3LYN 1 A, B SPERM LYSIN 6456
7 5MR3 1 A, C, E, G Egg-lysin 6454
8 1LIS 1 A LYSIN 6454
9 5II9 1 A, B, C, D, E, F Egg-lysin 6454
10 2LYN 1 A, B, C, D SPERM LYSIN 6454
11 1LYN 1 A, B SPERM LYSIN 6454
12 5UTG 1 A Egg-lysin UNP residues 19-152 6454