Sequence Similarity Clusters for the Entities in PDB 1LYB

Entity #1 | Chains: A,C
CATHEPSIN D protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 6 4119
95 % 2 6 4892
90 % 2 6 4905
70 % 2 6 4836
50 % 2 6 4652
40 % 2 6 4417
30 % 2 6 4034
Entity #2 | Chains: B,D
CATHEPSIN D protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 6 4036
95 % 2 6 4796
90 % 2 6 4810
70 % 2 6 4728
50 % 2 6 4558
40 % 2 6 4326
30 % 2 6 3958
Entity #3 | Chains: I,J
PEPSTATIN protein, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.