Sequence Similarity Clusters for the Entities in PDB 1LYB

Entity #1 | Chains: A,C
CATHEPSIN D protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 6 4351
95 % 2 6 5153 Flexibility: Medium
Max RMSD: 6.2, Avg RMSD: 3.4
PDBFlex
90 % 2 6 5170
70 % 2 6 5097
50 % 2 6 4874
40 % 2 6 4616
30 % 2 6 4227
Entity #2 | Chains: B,D
CATHEPSIN D protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 6 4265
95 % 2 6 5058 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.1
PDBFlex
90 % 2 6 5078
70 % 2 6 4990
50 % 2 6 4773
40 % 2 6 4518
30 % 2 6 4145
Entity #3 | Chains: I,J
PEPSTATIN protein, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.