Sequence Similarity Clusters for the Entities in PDB 1LYB

Entity #1 | Chains: A,C
CATHEPSIN D protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 6 3976
95 % 2 6 4711
90 % 2 6 4730
70 % 2 6 4674
50 % 2 6 4494
40 % 2 6 4281
30 % 2 6 3923
Entity #2 | Chains: B,D
CATHEPSIN D protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 6 3897
95 % 2 6 4620
90 % 2 6 4639
70 % 2 6 4570
50 % 2 6 4400
40 % 2 6 4189
30 % 2 6 3846
Entity #3 | Chains: I,J
PEPSTATIN protein, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.