Sequence Similarity Clusters for the Entities in PDB 1LYB

Entity #1 | Chains: A,C
CATHEPSIN D protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 6 4533
95 % 2 6 5343 Flexibility: Medium
Max RMSD: 6.2, Avg RMSD: 3.2
PDBFlex
90 % 2 6 5362
70 % 2 6 5270
50 % 2 6 5035
40 % 2 6 4765
30 % 2 6 4353
Entity #2 | Chains: B,D
CATHEPSIN D protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 6 4443
95 % 2 6 5247 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.1
PDBFlex
90 % 2 6 5269
70 % 2 6 5161
50 % 2 6 4930
40 % 2 6 4663
30 % 2 6 4263
Entity #3 | Chains: I,J
PEPSTATIN protein, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures