Sequence Similarity Clusters for the Entities in PDB 1LYA

Entity #1 | Chains: A,C
CATHEPSIN D protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 4618
95 % 3 6 5423 Flexibility: Medium
Max RMSD: 6.2, Avg RMSD: 3.2
PDBFlex
90 % 3 6 5449
70 % 3 6 5351
50 % 3 6 5103
40 % 3 6 4824
30 % 3 6 4414
Entity #2 | Chains: B,D
CATHEPSIN D protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 4526
95 % 3 6 5326 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.1
PDBFlex
90 % 3 6 5354
70 % 3 6 5247
50 % 3 6 5001
40 % 3 6 4724
30 % 3 6 4327

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures