Sequence Similarity Clusters for the Entities in PDB 1LYA

Entity #1 | Chains: A,C
CATHEPSIN D protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 5155
95 % 3 6 5477 Flexibility: Medium
Max RMSD: 6.2, Avg RMSD: 3.1
PDBFlex
90 % 3 6 5510
70 % 3 6 5396
50 % 3 6 5133
40 % 3 6 4818
30 % 3 6 4320
Entity #2 | Chains: B,D
CATHEPSIN D protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 5198
95 % 3 6 5522 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.1
PDBFlex
90 % 3 6 5557
70 % 3 6 5443
50 % 3 6 5185
40 % 3 6 4867
30 % 3 6 4353

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures