Sequence Similarity Clusters for the Entities in PDB 1LYA

Entity #1 | Chains: A,C
CATHEPSIN D protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 4412
95 % 3 6 5211 Flexibility: Medium
Max RMSD: 6.2, Avg RMSD: 3.2
PDBFlex
90 % 3 6 5230
70 % 3 6 5150
50 % 3 6 4925
40 % 3 6 4665
30 % 3 6 4267
Entity #2 | Chains: B,D
CATHEPSIN D protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 4325
95 % 3 6 5116 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.1
PDBFlex
90 % 3 6 5139
70 % 3 6 5042
50 % 3 6 4823
40 % 3 6 4565
30 % 3 6 4182

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.