Sequence Similarity Clusters for the Entities in PDB 1LWU

Entity #1 | Chains: A,D,G,J
Fibrinogen alpha-1 chain protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 14361
95 % 1 2 13612 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.2
PDBFlex
90 % 1 2 13387
70 % 1 2 12571
50 % 1 2 11207
40 % 1 2 10148
30 % 1 2 8841
Entity #2 | Chains: B,E,H,K
Fibrinogen beta chain protein, length: 323 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 12575
95 % 1 2 12240 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 1 2 12067
70 % 1 2 11397
50 % 20 30 845
40 % 20 30 886
30 % 39 61 423
Entity #3 | Chains: C,F,I,L
Fibrinogen gamma chain protein, length: 323 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 19786
95 % 1 2 12192 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.5
PDBFlex
90 % 1 2 12025
70 % 1 2 11362
50 % 20 31 819
40 % 20 31 858
30 % 40 61 423
Entity #4 | Chains: M,N,O,P
Ligand Gly-His-Arg-Pro-NH2 protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures