Sequence Similarity Clusters for the Entities in PDB 1LWU

Entity #1 | Chains: A,D,G,J
Fibrinogen alpha-1 chain protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 13279
95 % 1 2 12595 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.2
PDBFlex
90 % 1 2 12394
70 % 1 2 11689
50 % 1 2 10438
40 % 1 2 9431
30 % 1 2 8085
Entity #2 | Chains: B,E,H,K
Fibrinogen beta chain protein, length: 323 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 14464
95 % 1 2 13578 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 1 2 13345
70 % 1 2 12511
50 % 20 30 874
40 % 20 30 899
30 % 39 61 440
Entity #3 | Chains: C,F,I,L
Fibrinogen gamma chain protein, length: 323 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 22941
95 % 1 2 13579 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 2.0
PDBFlex
90 % 1 2 13346
70 % 1 2 12512
50 % 20 31 839
40 % 20 31 866
30 % 40 61 440
Entity #4 | Chains: M,N,O,P
Ligand Gly-His-Arg-Pro-NH2 protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures