Sequence Similarity Clusters for the Entities in PDB 1LWU

Entity #1 | Chains: A,D,G,J
Fibrinogen alpha-1 chain protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 13870
95 % 1 2 13179 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.2
PDBFlex
90 % 1 2 12961
70 % 1 2 12195
50 % 1 2 10876
40 % 1 2 9863
30 % 1 2 8594
Entity #2 | Chains: B,E,H,K
Fibrinogen beta chain protein, length: 323 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 12148
95 % 1 2 11846 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 1 2 11679
70 % 1 2 11041
50 % 20 30 826
40 % 20 30 862
30 % 39 61 401
Entity #3 | Chains: C,F,I,L
Fibrinogen gamma chain protein, length: 323 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 19089
95 % 1 2 11802 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.5
PDBFlex
90 % 1 2 11641
70 % 1 2 11010
50 % 20 31 798
40 % 20 31 836
30 % 40 61 401
Entity #4 | Chains: M,N,O,P
Ligand Gly-His-Arg-Pro-NH2 protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.