Sequence Similarity Clusters for the Entities in PDB 1LWU

Entity #1 | Chains: A,D,G,J
Fibrinogen alpha-1 chain protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 13372
95 % 1 2 12718 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.1
PDBFlex
90 % 1 2 12511
70 % 1 2 11752
50 % 1 2 10506
40 % 1 2 9528
30 % 1 2 8287
Entity #2 | Chains: B,E,H,K
Fibrinogen beta chain protein, length: 323 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 11716
95 % 1 2 11435 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 1 2 11276
70 % 1 2 10650
50 % 20 30 796
40 % 20 30 832
30 % 39 61 374
Entity #3 | Chains: C,F,I,L
Fibrinogen gamma chain protein, length: 323 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 18404
95 % 1 2 11398 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 2.0
PDBFlex
90 % 1 2 11243
70 % 1 2 10623
50 % 20 31 765
40 % 20 31 797
30 % 40 61 374
Entity #4 | Chains: M,N,O,P
Ligand Gly-His-Arg-Pro-NH2 protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.