Sequence Similarity Clusters for the Entities in PDB 1LWU

Entity #1 | Chains: A,D,G,J
Fibrinogen alpha-1 chain protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 14114
95 % 1 2 13388 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.2
PDBFlex
90 % 1 2 13169
70 % 1 2 12387
50 % 1 2 11045
40 % 1 2 10009
30 % 1 2 8719
Entity #2 | Chains: B,E,H,K
Fibrinogen beta chain protein, length: 323 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 12362
95 % 1 2 12038 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 1 2 11869
70 % 1 2 11222
50 % 20 30 837
40 % 20 30 877
30 % 39 61 420
Entity #3 | Chains: C,F,I,L
Fibrinogen gamma chain protein, length: 323 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 19467
95 % 1 2 11993 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.5
PDBFlex
90 % 1 2 11830
70 % 1 2 11190
50 % 20 31 808
40 % 20 31 848
30 % 40 61 420
Entity #4 | Chains: M,N,O,P
Ligand Gly-His-Arg-Pro-NH2 protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures