Sequence Similarity Clusters for the Entities in PDB 1LWT

Entity #1 | Chains: B
PI-SceI DNA substrate top strand dna, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C
PI-SceI DNA substrate bottom strand dna, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
ENDONUCLEASE PI-SCEI protein, length: 454 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 9880
95 % 6 7 6108 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.9
PDBFlex
90 % 6 7 6098
70 % 6 7 5948
50 % 6 7 5557
40 % 6 7 5218
30 % 6 7 4687

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.