Sequence Similarity Clusters for the Entities in PDB 1LWS

Entity #1 | Chains: B
PI-SceI DNA recognition region top strand dna, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C
PI-SceI DNA recognition region bottom strand dna, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
ENDONUCLEASE PI-SCEI protein, length: 454 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 10141
95 % 7 7 6270 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.7
PDBFlex
90 % 7 7 6261
70 % 7 7 6105
50 % 7 7 5705
40 % 7 7 5362
30 % 7 7 4810

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures