Sequence Similarity Clusters for the Entities in PDB 1LWS

Entity #1 | Chains: B
PI-SceI DNA recognition region top strand dna, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C
PI-SceI DNA recognition region bottom strand dna, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
ENDONUCLEASE PI-SCEI protein, length: 454 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 10002
95 % 7 7 6180 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.8
PDBFlex
90 % 7 7 6170
70 % 7 7 6031
50 % 7 7 5637
40 % 7 7 5293
30 % 7 7 4749

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.