Sequence Similarity Clusters for the Entities in PDB 1LVM

Entity #1 | Chains: A,B
CATALYTIC DOMAIN OF THE NUCLEAR INCLUSION PROTEIN A (NIA) protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39807
95 % 1 3 12302 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.3
PDBFlex
90 % 1 3 12128
70 % 1 3 11453
50 % 2 4 7924
40 % 2 4 7288
30 % 2 4 6429
Entity #2 | Chains: C,D
OLIGOPEPTIDE SUBSTRATE FOR THE PROTEASE protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: E
CATALYTIC DOMAIN OF THE NUCLEAR INCLUSION PROTEIN A (NIA) protein, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures