Sequence Similarity Clusters for the Entities in PDB 1LVM

Entity #1 | Chains: A,B
CATALYTIC DOMAIN OF THE NUCLEAR INCLUSION PROTEIN A (NIA) protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39322
95 % 1 3 12148 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.3
PDBFlex
90 % 1 3 11986
70 % 1 3 11329
50 % 2 4 7835
40 % 2 4 7204
30 % 2 4 6360
Entity #2 | Chains: C,D
OLIGOPEPTIDE SUBSTRATE FOR THE PROTEASE protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: E
CATALYTIC DOMAIN OF THE NUCLEAR INCLUSION PROTEIN A (NIA) protein, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.