Sequence Similarity Clusters for the Entities in PDB 1LVB

Entity #1 | Chains: A,B
CATALYTIC DOMAIN OF THE NUCLEAR INCLUSION PROTEIN A (NIA) protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 20038
95 % 2 3 11980 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.4
PDBFlex
90 % 2 3 11813
70 % 2 3 11133
50 % 3 4 7726
40 % 3 4 7112
30 % 3 4 6277
Entity #2 | Chains: C,D
OLIGOPEPTIDE SUBSTRATE FOR THE PROTEASE protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.