Sequence Similarity Clusters for the Entities in PDB 1LTX

Entity #1 | Chains: A
RAB GERANYLGERANYLTRANSFERASE ALPHA SUBUNIT protein, length: 567 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 23631
95 % 2 2 20107
90 % 2 2 19565
70 % 2 2 18054
50 % 2 2 15759
40 % 2 2 14093
30 % 2 2 12105
Entity #2 | Chains: B
RAB GERANYLGERANYLTRANSFERASE BETA SUBUNIT protein, length: 331 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 21 1998
95 % 21 21 2613
90 % 21 21 2662
70 % 21 21 2638
50 % 21 21 2601
40 % 21 21 2572
30 % 21 21 2406
Entity #3 | Chains: R
Rab Escort Protein 1 protein, length: 650 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 47594
95 % 3 3 10310
90 % 3 3 10182
70 % 3 3 9663
50 % 3 3 8800
40 % 3 3 8063
30 % 3 3 7111
Entity #4 | Chains: P
AAAA protein, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.