Sequence Similarity Clusters for the Entities in PDB 1LTX

Entity #1 | Chains: A
RAB GERANYLGERANYLTRANSFERASE ALPHA SUBUNIT protein, length: 567 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 29213
95 % 2 2 25530 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.2
PDBFlex
90 % 2 2 24641
70 % 2 2 22332
50 % 2 2 19180
40 % 2 2 16958
30 % 2 2 14216
Entity #2 | Chains: B
RAB GERANYLGERANYLTRANSFERASE BETA SUBUNIT protein, length: 331 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 21 2630
95 % 21 21 2953 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.4
PDBFlex
90 % 21 21 3005
70 % 21 21 2960
50 % 21 21 2920
40 % 21 21 2842
30 % 21 21 2629
Entity #3 | Chains: R
Rab Escort Protein 1 protein, length: 650 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 12158
95 % 3 3 11687 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.8
PDBFlex
90 % 3 3 11526
70 % 3 3 10892
50 % 3 3 9777
40 % 3 3 8853
30 % 3 3 7634
Entity #4 | Chains: P
AAAA protein, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures