Sequence Similarity Clusters for the Entities in PDB 1LTX

Entity #1 | Chains: A
RAB GERANYLGERANYLTRANSFERASE ALPHA SUBUNIT protein, length: 567 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 25309
95 % 2 2 21537 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.2
PDBFlex
90 % 2 2 20928
70 % 2 2 19216
50 % 2 2 16702
40 % 2 2 14916
30 % 2 2 12800
Entity #2 | Chains: B
RAB GERANYLGERANYLTRANSFERASE BETA SUBUNIT protein, length: 331 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 21 2174
95 % 21 21 2807 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.4
PDBFlex
90 % 21 21 2854
70 % 21 21 2828
50 % 21 21 2788
40 % 21 21 2742
30 % 21 21 2567
Entity #3 | Chains: R
Rab Escort Protein 1 protein, length: 650 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 50749
95 % 3 3 11078 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.8
PDBFlex
90 % 3 3 10929
70 % 3 3 10374
50 % 3 3 9397
40 % 3 3 8607
30 % 3 3 7579
Entity #4 | Chains: P
AAAA protein, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures