Sequence Similarity Clusters for the Entities in PDB 1LTX

Entity #1 | Chains: A
RAB GERANYLGERANYLTRANSFERASE ALPHA SUBUNIT protein, length: 567 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 25004
95 % 2 2 21297 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.2
PDBFlex
90 % 2 2 20696
70 % 2 2 19004
50 % 2 2 16528
40 % 2 2 14767
30 % 2 2 12668
Entity #2 | Chains: B
RAB GERANYLGERANYLTRANSFERASE BETA SUBUNIT protein, length: 331 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 21 2123
95 % 21 21 2753 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.4
PDBFlex
90 % 21 21 2797
70 % 21 21 2775
50 % 21 21 2741
40 % 21 21 2703
30 % 21 21 2534
Entity #3 | Chains: R
Rab Escort Protein 1 protein, length: 650 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 50115
95 % 3 3 10942 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.8
PDBFlex
90 % 3 3 10805
70 % 3 3 10267
50 % 3 3 9294
40 % 3 3 8514
30 % 3 3 7498
Entity #4 | Chains: P
AAAA protein, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.