Sequence Similarity Clusters for the Entities in PDB 1LTX

Entity #1 | Chains: A
RAB GERANYLGERANYLTRANSFERASE ALPHA SUBUNIT protein, length: 567 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 24604
95 % 2 2 20936 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.3
PDBFlex
90 % 2 2 20351
70 % 2 2 18740
50 % 2 2 16311
40 % 2 2 14582
30 % 2 2 12511
Entity #2 | Chains: B
RAB GERANYLGERANYLTRANSFERASE BETA SUBUNIT protein, length: 331 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 21 2094
95 % 21 21 2719 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.4
PDBFlex
90 % 21 21 2764
70 % 21 21 2745
50 % 21 21 2711
40 % 21 21 2672
30 % 21 21 2506
Entity #3 | Chains: R
Rab Escort Protein 1 protein, length: 650 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 49470
95 % 3 3 10791 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 2.2
PDBFlex
90 % 3 3 10650
70 % 3 3 10091
50 % 3 3 9144
40 % 3 3 8380
30 % 3 3 7376
Entity #4 | Chains: P
AAAA protein, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.