Sequence Similarity Clusters for the Entities in PDB 1LTT

Entity #1 | Chains: D,E,F,G,H
HEAT-LABILE ENTEROTOXIN, SUBUNIT B protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 19 247
95 % 16 22 271 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 45 55 84
70 % 48 58 97
50 % 48 58 131
40 % 48 58 147
30 % 48 58 161
Entity #2 | Chains: A
HEAT-LABILE ENTEROTOXIN, SUBUNIT A protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 17251
95 % 4 7 11537 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 4 7 11377
70 % 6 11 6714
50 % 7 12 5885
40 % 7 12 5485
30 % 7 12 4815
Entity #3 | Chains: C
HEAT-LABILE ENTEROTOXIN, SUBUNIT A protein, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 11980
95 % 4 7 11563 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 4 7 11401
70 % 4 7 10767
50 % 4 8 8923
40 % 4 8 8103
30 % 4 8 7008

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2A5D 2 B Cholera enterotoxin, A chain A1 subunit 666 2.4.2.36 | Details
2 1LTS 2 A HEAT-LABILE ENTEROTOXIN, SUBUNIT A 562
3 2A5F 2 B Cholera enterotoxin, A chain Cholera toxin A1 subunit 666 2.4.2.36 | Details
4 1LTI 2 A HEAT LABILE ENTEROTOXIN TYPE I LATENT/INACTIVE FORM 562
5 1LTA 2 A HEAT-LABILE ENTEROTOXIN, SUBUNIT A 562
6 1TII 2 A HEAT LABILE ENTEROTOXIN TYPE IIB LATENT/INACTIVE FORM 562
7 1LTT 2 A HEAT-LABILE ENTEROTOXIN, SUBUNIT A 562
8 1LTG 2 A HEAT-LABILE ENTEROTOXIN 562
9 1XTC 1 A CHOLERA TOXIN 666
10 1LTB 2 A HEAT-LABILE ENTEROTOXIN, SUBUNIT A 562
11 1HTL 2 A HEAT-LABILE ENTEROTOXIN, SUBUNIT A 562
12 2A5G 2 B Cholera enterotoxin, A chain Cholera toxin A1 subunit 666 2.4.2.36 | Details