Sequence Similarity Clusters for the Entities in PDB 1LTT

Entity #1 | Chains: D,E,F,G,H
HEAT-LABILE ENTEROTOXIN, SUBUNIT B protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 19 251
95 % 16 22 275 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 45 55 84
70 % 48 58 97
50 % 48 58 131
40 % 48 58 148
30 % 48 58 161
Entity #2 | Chains: A
HEAT-LABILE ENTEROTOXIN, SUBUNIT A protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 17379
95 % 4 7 11616 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 4 7 11452
70 % 6 11 6763
50 % 7 12 5936
40 % 7 12 5534
30 % 7 12 4860
Entity #3 | Chains: C
HEAT-LABILE ENTEROTOXIN, SUBUNIT A protein, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 12068
95 % 4 7 11639 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 4 7 11474
70 % 4 7 10857
50 % 4 8 9003
40 % 4 8 8171
30 % 4 8 7065

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1LTS 2 A HEAT-LABILE ENTEROTOXIN, SUBUNIT A 562
2 1LTI 2 A HEAT LABILE ENTEROTOXIN TYPE I LATENT/INACTIVE FORM 562
3 1LTA 2 A HEAT-LABILE ENTEROTOXIN, SUBUNIT A 562
4 1LTT 2 A HEAT-LABILE ENTEROTOXIN, SUBUNIT A 562
5 1LTB 2 A HEAT-LABILE ENTEROTOXIN, SUBUNIT A 562