Sequence Similarity Clusters for the Entities in PDB 1LTT

Entity #1 | Chains: D,E,F,G,H
HEAT-LABILE ENTEROTOXIN, SUBUNIT B protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 19 257
95 % 16 22 280 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 45 55 110
70 % 48 58 104
50 % 48 58 137
40 % 48 58 152
30 % 48 58 167
Entity #2 | Chains: A
HEAT-LABILE ENTEROTOXIN, SUBUNIT A protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 17890
95 % 4 7 11923 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 4 7 11753
70 % 6 11 6923
50 % 7 12 6068
40 % 7 12 5649
30 % 7 12 4951
Entity #3 | Chains: C
HEAT-LABILE ENTEROTOXIN, SUBUNIT A protein, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 12404
95 % 4 7 11948 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 4 7 11776
70 % 4 7 11135
50 % 4 8 9225
40 % 4 8 8355
30 % 4 8 7225

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1LTS 2 A HEAT-LABILE ENTEROTOXIN, SUBUNIT A 562
2 1LTI 2 A HEAT LABILE ENTEROTOXIN TYPE I LATENT/INACTIVE FORM 562
3 1LTA 2 A HEAT-LABILE ENTEROTOXIN, SUBUNIT A 562
4 1LTT 2 A HEAT-LABILE ENTEROTOXIN, SUBUNIT A 562
5 1LTB 2 A HEAT-LABILE ENTEROTOXIN, SUBUNIT A 562