Sequence Similarity Clusters for the Entities in PDB 1LTT

Entity #1 | Chains: D,E,F,G,H
HEAT-LABILE ENTEROTOXIN, SUBUNIT B protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 19 218
95 % 16 22 256 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 45 55 78
70 % 48 58 86
50 % 48 58 118
40 % 48 58 141
30 % 48 58 146
Entity #2 | Chains: A
HEAT-LABILE ENTEROTOXIN, SUBUNIT A protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 15531
95 % 4 7 10610 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 4 7 10465
70 % 6 11 6274
50 % 7 12 5430
40 % 7 12 5104
30 % 7 12 4602
Entity #3 | Chains: C
HEAT-LABILE ENTEROTOXIN, SUBUNIT A protein, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 10962
95 % 4 7 10950 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 4 7 10803
70 % 4 7 10249
50 % 4 8 8538
40 % 4 8 7826
30 % 4 8 6910

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1DJR 1 D, E, F, G, H HEAT-LABILE ENTEROTOXIN B PENTAMER 562
2 5LZI 1 A, B, C, D, E Heat-labile enterotoxin B chain 562
3 1EFI 1 D, E, F, G, H PROTEIN (HEAT-LABILE ENTEROTOXIN B CHAIN) 562
4 1LT5 1 D, E, F, G, H HEAT-LABILE ENTEROTOXIN B-PENTAMER 562
5 1EEF 1 D, E, F, G, H, L, M, N, O, P PROTEIN (HEAT-LABILE ENTEROTOXIN B CHAIN) 562
6 1FD7 1 D, E, F, G, H, L, M, N, O, P HEAT-LABILE ENTEROTOXIN B CHAIN 562
7 2XRS 1 D, E, F, G, H, L, M, N, O, P HEAT-LABILE ENTEROTOXIN B CHAIN PORCINE ENTEROTOXIN PLT B SUBUNIT CONTAINS LINEAR NEOLACTOTETRAOSE GAL BETA4 GLCNAC BETA3 GAL BETA4 562
8 1PZI 1 D, E, F, G, H Heat-labile Enterotoxin B subunit 562
9 1LTS 1 D, E, F, G, H HEAT-LABILE ENTEROTOXIN, SUBUNIT B 562
10 1LT3 1 D, E, F, G, H HEAT-LABILE ENTEROTOXIN LACTOSE BOUND HOLOTOXIN 562
11 1LT4 1 D, E, F, G, H HEAT-LABILE ENTEROTOXIN LACTOSE HOLOTOXIN 562
12 1LTI 1 D, E, F, G, H HEAT LABILE ENTEROTOXIN TYPE I LATENT/INACTIVE FORM 562
13 1LTA 1 D, E, F, G, H HEAT-LABILE ENTEROTOXIN, SUBUNIT B 562
14 1LT6 1 D, E, F, G, H, L, M, N, O, P HEAT-LABILE ENTEROTOXIN B-PENTAMER 562
15 1JQY 1 D, E, F, G, H, L, M, N, O, P, V, W, X, Y, Z HEAT-LABILE ENTEROTOXIN B CHAIN 562
16 1LTT 1 D, E, F, G, H HEAT-LABILE ENTEROTOXIN, SUBUNIT B 562
17 1LTG 1 D, E, F, G, H HEAT-LABILE ENTEROTOXIN 562
18 1LTB 1 D, E, F, G, H HEAT-LABILE ENTEROTOXIN, SUBUNIT B 562
19 2O2L 1 D, E, F, G, H, I, J, K, L, M Heat-labile enterotoxin B chain 562
20 2XRQ 1 D, E, F, G, H HEAT-LABILE ENTEROTOXIN B CHAIN PORCINE ENTEROTOXIN PLT B-SUBUNIT CONTAINING GM1 PENTASACCHARIDE(GAL-BETA3-GALNAC-BETA4 (NEUAC ALPHA3)-GAL-BETA4 -GLC RESIDUES 22-124 562
21 1HTL 1 D, E, F, G, H HEAT-LABILE ENTEROTOXIN, SUBUNIT B 562
22 1LTR 1 D, E, F, G, H HEAT-LABILE ENTEROTOXIN THE B SUBUNIT HAS A PEPTIDE WITH ANTI-HSV ACTIVITY AS AN EXTENSION, RESIDUES 104-113 SUBUNIT B-R2 562