Sequence Similarity Clusters for the Entities in PDB 1LTT

Entity #1 | Chains: D,E,F,G,H
HEAT-LABILE ENTEROTOXIN, SUBUNIT B protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 19 217
95 % 16 22 255 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 45 55 77
70 % 48 58 84
50 % 48 58 117
40 % 48 58 140
30 % 48 58 145
Entity #2 | Chains: A
HEAT-LABILE ENTEROTOXIN, SUBUNIT A protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 15514
95 % 4 7 10599 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 4 7 10456
70 % 6 11 6270
50 % 7 12 5427
40 % 7 12 5101
30 % 7 12 4599
Entity #3 | Chains: C
HEAT-LABILE ENTEROTOXIN, SUBUNIT A protein, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 10952
95 % 4 7 10939 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 4 7 10794
70 % 4 7 10237
50 % 4 8 8530
40 % 4 8 7819
30 % 4 8 6903

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1DJR 1 D, E, F, G, H HEAT-LABILE ENTEROTOXIN B PENTAMER 562
2 1EFI 1 D, E, F, G, H PROTEIN (HEAT-LABILE ENTEROTOXIN B CHAIN) 562
3 1LT5 1 D, E, F, G, H HEAT-LABILE ENTEROTOXIN B-PENTAMER 562
4 1EEF 1 D, E, F, G, H, L, M, N, O, P PROTEIN (HEAT-LABILE ENTEROTOXIN B CHAIN) 562
5 1FD7 1 D, E, F, G, H, L, M, N, O, P HEAT-LABILE ENTEROTOXIN B CHAIN 562
6 2XRS 1 D, E, F, G, H, L, M, N, O, P HEAT-LABILE ENTEROTOXIN B CHAIN PORCINE ENTEROTOXIN PLT B SUBUNIT CONTAINS LINEAR NEOLACTOTETRAOSE GAL BETA4 GLCNAC BETA3 GAL BETA4 562
7 1PZI 1 D, E, F, G, H Heat-labile Enterotoxin B subunit 562
8 1LTS 1 D, E, F, G, H HEAT-LABILE ENTEROTOXIN, SUBUNIT B 562
9 1LT3 1 D, E, F, G, H HEAT-LABILE ENTEROTOXIN LACTOSE BOUND HOLOTOXIN 562
10 1LT4 1 D, E, F, G, H HEAT-LABILE ENTEROTOXIN LACTOSE HOLOTOXIN 562
11 1LTI 1 D, E, F, G, H HEAT LABILE ENTEROTOXIN TYPE I LATENT/INACTIVE FORM 562
12 1LTA 1 D, E, F, G, H HEAT-LABILE ENTEROTOXIN, SUBUNIT B 562
13 1LT6 1 D, E, F, G, H, L, M, N, O, P HEAT-LABILE ENTEROTOXIN B-PENTAMER 562
14 1JQY 1 D, E, F, G, H, L, M, N, O, P, V, W, X, Y, Z HEAT-LABILE ENTEROTOXIN B CHAIN 562
15 1LTT 1 D, E, F, G, H HEAT-LABILE ENTEROTOXIN, SUBUNIT B 562
16 1LTG 1 D, E, F, G, H HEAT-LABILE ENTEROTOXIN 562
17 1LTB 1 D, E, F, G, H HEAT-LABILE ENTEROTOXIN, SUBUNIT B 562
18 2XRQ 1 D, E, F, G, H HEAT-LABILE ENTEROTOXIN B CHAIN PORCINE ENTEROTOXIN PLT B-SUBUNIT CONTAINING GM1 PENTASACCHARIDE(GAL-BETA3-GALNAC-BETA4 (NEUAC ALPHA3)-GAL-BETA4 -GLC RESIDUES 22-124 562
19 1HTL 1 D, E, F, G, H HEAT-LABILE ENTEROTOXIN, SUBUNIT B 562