Sequence Similarity Clusters for the Entities in PDB 1LTS

Entity #1 | Chains: D,E,F,G,H
HEAT-LABILE ENTEROTOXIN, SUBUNIT B protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 19 217
95 % 9 22 255 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 31 55 77
70 % 34 58 83
50 % 34 58 116
40 % 34 58 139
30 % 34 58 146
Entity #2 | Chains: A
HEAT-LABILE ENTEROTOXIN, SUBUNIT A protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 15462
95 % 1 7 10567 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 1 7 10424
70 % 2 11 6249
50 % 2 12 5411
40 % 2 12 5085
30 % 2 12 4584
Entity #3 | Chains: C
HEAT-LABILE ENTEROTOXIN, SUBUNIT A protein, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 10915
95 % 1 7 10906
90 % 1 7 10761
70 % 1 7 10207
50 % 1 8 8508
40 % 1 8 7798
30 % 1 8 6885

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.