Sequence Similarity Clusters for the Entities in PDB 1LTJ

Entity #1 | Chains: A,D
Fibrinogen alpha/alpha-E chain protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 11 2246
95 % 7 11 2895 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 7 11 2935
70 % 7 11 2897
50 % 7 11 2851
40 % 7 11 2808
30 % 7 11 2628
Entity #2 | Chains: B,E
Fibrinogen Beta chain protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 25 671
95 % 12 28 802 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.9
PDBFlex
90 % 12 28 830
70 % 12 28 868
50 % 12 30 826
40 % 12 30 862
30 % 23 61 401
Entity #3 | Chains: C,F
Fibrinogen Gamma chain protein, length: 311 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 23 720
95 % 12 29 764 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.1
PDBFlex
90 % 12 29 796
70 % 12 29 837
50 % 12 31 798
40 % 12 31 836
30 % 24 61 401
Entity #4 | Chains: G,I
Gly-Pro-Arg-Pro protein, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: H,J
Gly-His-Arg-Pro protein, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.