Sequence Similarity Clusters for the Entities in PDB 1LTJ

Entity #1 | Chains: A,D
Fibrinogen alpha/alpha-E chain protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 11 2200
95 % 7 11 2853 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 7 11 2893
70 % 7 11 2859
50 % 7 11 2818
40 % 7 11 2782
30 % 7 11 2601
Entity #2 | Chains: B,E
Fibrinogen Beta chain protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 25 660
95 % 12 28 795 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 12 28 822
70 % 12 28 861
50 % 12 30 820
40 % 12 30 855
30 % 23 61 394
Entity #3 | Chains: C,F
Fibrinogen Gamma chain protein, length: 311 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 23 711
95 % 12 29 756 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.0
PDBFlex
90 % 12 29 788
70 % 12 29 829
50 % 12 31 789
40 % 12 31 825
30 % 24 61 394
Entity #4 | Chains: G,I
Gly-Pro-Arg-Pro protein, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: H,J
Gly-His-Arg-Pro protein, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.