Sequence Similarity Clusters for the Entities in PDB 1LTJ

Entity #1 | Chains: A,D
Fibrinogen alpha/alpha-E chain protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 11 2170
95 % 7 11 2814 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 7 11 2855
70 % 7 11 2823
50 % 7 11 2784
40 % 7 11 2743
30 % 7 11 2565
Entity #2 | Chains: B,E
Fibrinogen Beta chain protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 25 654
95 % 12 28 791 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.9
PDBFlex
90 % 12 28 818
70 % 12 28 857
50 % 12 30 808
40 % 12 30 844
30 % 23 61 382
Entity #3 | Chains: C,F
Fibrinogen Gamma chain protein, length: 311 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 23 703
95 % 12 29 754 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.0
PDBFlex
90 % 12 29 785
70 % 12 29 826
50 % 12 31 782
40 % 12 31 815
30 % 24 61 382
Entity #4 | Chains: G,I
Gly-Pro-Arg-Pro protein, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: H,J
Gly-His-Arg-Pro protein, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.