Sequence Similarity Clusters for the Entities in PDB 1LTJ

Entity #1 | Chains: A,D
Fibrinogen alpha/alpha-E chain protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 11 2328
95 % 7 11 2987 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 7 11 3025
70 % 7 11 2989
50 % 7 11 2940
40 % 7 11 2888
30 % 7 11 2704
Entity #2 | Chains: B,E
Fibrinogen Beta chain protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 25 694
95 % 12 28 830 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.9
PDBFlex
90 % 12 28 861
70 % 12 28 898
50 % 12 30 845
40 % 12 30 886
30 % 23 61 423
Entity #3 | Chains: C,F
Fibrinogen Gamma chain protein, length: 311 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 23 740
95 % 12 29 788 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.1
PDBFlex
90 % 12 29 821
70 % 12 29 862
50 % 12 31 819
40 % 12 31 858
30 % 24 61 423
Entity #4 | Chains: G,I
Gly-Pro-Arg-Pro protein, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: H,J
Gly-His-Arg-Pro protein, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures