Sequence Similarity Clusters for the Entities in PDB 1LTJ

Entity #1 | Chains: A,D
Fibrinogen alpha/alpha-E chain protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 11 2054
95 % 7 11 2681
90 % 7 11 2725
70 % 7 11 2700
50 % 7 11 2652
40 % 7 11 2616
30 % 7 11 2446
Entity #2 | Chains: B,E
Fibrinogen Beta chain protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 25 599
95 % 12 28 720
90 % 12 28 751
70 % 12 28 795
50 % 12 30 745
40 % 12 30 784
30 % 23 61 348
Entity #3 | Chains: C,F
Fibrinogen Gamma chain protein, length: 311 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 23 655
95 % 12 29 684
90 % 12 29 716
70 % 12 29 759
50 % 12 31 719
40 % 12 31 758
30 % 24 61 348
Entity #4 | Chains: G,I
Gly-Pro-Arg-Pro protein, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: H,J
Gly-His-Arg-Pro protein, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.