Sequence Similarity Clusters for the Entities in PDB 1LTI

Entity #1 | Chains: D,E,F,G,H
HEAT LABILE ENTEROTOXIN TYPE I protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 19 232
95 % 12 22 263 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 39 55 82
70 % 42 58 91
50 % 42 58 126
40 % 42 58 145
30 % 42 58 152
Entity #2 | Chains: A
HEAT LABILE ENTEROTOXIN TYPE I protein, length: 192 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 16106
95 % 2 7 10972 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 2 7 10825
70 % 4 11 6466
50 % 4 12 5588
40 % 4 12 5245
30 % 4 12 4732
Entity #3 | Chains: C
HEAT LABILE ENTEROTOXIN TYPE I protein, length: 48 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 11356
95 % 2 7 11316 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 2 7 11171
70 % 2 7 10584
50 % 2 8 8796
40 % 2 8 8058
30 % 2 8 7107

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures