Sequence Similarity Clusters for the Entities in PDB 1LTI

Entity #1 | Chains: D,E,F,G,H
HEAT LABILE ENTEROTOXIN TYPE I protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 19 209
95 % 12 22 239 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 39 55 73
70 % 42 58 80
50 % 42 58 108
40 % 42 58 133
30 % 42 58 142
Entity #2 | Chains: A
HEAT LABILE ENTEROTOXIN TYPE I protein, length: 192 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 14851
95 % 2 7 10145 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 2 7 10014
70 % 4 11 5987
50 % 4 12 5184
40 % 4 12 4879
30 % 4 12 4406
Entity #3 | Chains: C
HEAT LABILE ENTEROTOXIN TYPE I protein, length: 48 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 10486
95 % 2 7 10471 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 2 7 10335
70 % 2 7 9795
50 % 2 8 8181
40 % 2 8 7502
30 % 2 8 6624

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.