Sequence Similarity Clusters for the Entities in PDB 1LTI

Entity #1 | Chains: D,E,F,G,H
HEAT LABILE ENTEROTOXIN TYPE I protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 19 222
95 % 12 22 259 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 39 55 81
70 % 42 58 88
50 % 42 58 118
40 % 42 58 142
30 % 42 58 147
Entity #2 | Chains: A
HEAT LABILE ENTEROTOXIN TYPE I protein, length: 192 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 15707
95 % 2 7 10702 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 2 7 10555
70 % 4 11 6330
50 % 4 12 5478
40 % 4 12 5146
30 % 4 12 4636
Entity #3 | Chains: C
HEAT LABILE ENTEROTOXIN TYPE I protein, length: 48 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 11072
95 % 2 7 11044 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 2 7 10899
70 % 2 7 10341
50 % 2 8 8612
40 % 2 8 7891
30 % 2 8 6962

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures