Sequence Similarity Clusters for the Entities in PDB 1LTI

Entity #1 | Chains: D,E,F,G,H
HEAT LABILE ENTEROTOXIN TYPE I protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 19 210
95 % 12 22 246 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 39 55 73
70 % 42 58 80
50 % 42 58 110
40 % 42 58 134
30 % 42 58 142
Entity #2 | Chains: A
HEAT LABILE ENTEROTOXIN TYPE I protein, length: 192 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 15111
95 % 2 7 10334 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 2 7 10200
70 % 4 11 6106
50 % 4 12 5288
40 % 4 12 4969
30 % 4 12 4485
Entity #3 | Chains: C
HEAT LABILE ENTEROTOXIN TYPE I protein, length: 48 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 10679
95 % 2 7 10669 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 2 7 10531
70 % 2 7 9973
50 % 2 8 8326
40 % 2 8 7637
30 % 2 8 6747

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.