Sequence Similarity Clusters for the Entities in PDB 1LTG

Entity #1 | Chains: D,E,F,G,H
HEAT-LABILE ENTEROTOXIN protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 19 249
95 % 17 22 274 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 47 55 84
70 % 50 58 97
50 % 50 58 131
40 % 50 58 148
30 % 50 58 161
Entity #2 | Chains: A
HEAT-LABILE ENTEROTOXIN protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 52826
95 % 5 7 11596 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 5 7 11433
70 % 7 11 6752
50 % 8 12 5924
40 % 8 12 5522
30 % 8 12 4845
Entity #3 | Chains: C
HEAT-LABILE ENTEROTOXIN protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 7 12044
95 % 5 7 11619 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 5 7 11455
70 % 5 7 10838
50 % 5 8 8981
40 % 5 8 8152
30 % 5 8 7049

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1LTS 3 C HEAT-LABILE ENTEROTOXIN, SUBUNIT A 562
2 1LTI 3 C HEAT LABILE ENTEROTOXIN TYPE I LATENT/INACTIVE FORM 562
3 1LTA 3 C HEAT-LABILE ENTEROTOXIN, SUBUNIT A 562
4 1LTT 3 C HEAT-LABILE ENTEROTOXIN, SUBUNIT A 562
5 1LTG 3 C HEAT-LABILE ENTEROTOXIN 562
6 1LTB 3 C HEAT-LABILE ENTEROTOXIN, SUBUNIT A 562
7 1HTL 3 C HEAT-LABILE ENTEROTOXIN, SUBUNIT A 562