Sequence Similarity Clusters for the Entities in PDB 1LTG

Entity #1 | Chains: D,E,F,G,H
HEAT-LABILE ENTEROTOXIN protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 19 245
95 % 17 22 266 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 47 55 82
70 % 50 58 94
50 % 50 58 127
40 % 50 58 147
30 % 50 58 163
Entity #2 | Chains: A
HEAT-LABILE ENTEROTOXIN protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 51979
95 % 5 7 11415 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 5 7 11259
70 % 7 11 6628
50 % 8 12 5823
40 % 8 12 5422
30 % 8 12 4767
Entity #3 | Chains: C
HEAT-LABILE ENTEROTOXIN protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 7 11830
95 % 5 7 11439 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 5 7 11280
70 % 5 7 10657
50 % 5 8 8829
40 % 5 8 8013
30 % 5 8 6937

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1LTS 3 C HEAT-LABILE ENTEROTOXIN, SUBUNIT A 562
2 1LTI 3 C HEAT LABILE ENTEROTOXIN TYPE I LATENT/INACTIVE FORM 562
3 1LTA 3 C HEAT-LABILE ENTEROTOXIN, SUBUNIT A 562
4 1LTT 3 C HEAT-LABILE ENTEROTOXIN, SUBUNIT A 562
5 1LTG 3 C HEAT-LABILE ENTEROTOXIN 562
6 1LTB 3 C HEAT-LABILE ENTEROTOXIN, SUBUNIT A 562
7 1HTL 3 C HEAT-LABILE ENTEROTOXIN, SUBUNIT A 562