Sequence Similarity Clusters for the Entities in PDB 1LTG

Entity #1 | Chains: D,E,F,G,H
HEAT-LABILE ENTEROTOXIN protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 19 256
95 % 17 22 279 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 47 55 90
70 % 50 58 102
50 % 50 58 135
40 % 50 58 151
30 % 50 58 166
Entity #2 | Chains: A
HEAT-LABILE ENTEROTOXIN protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 53655
95 % 5 7 11827 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 5 7 11651
70 % 7 11 6862
50 % 8 12 6015
40 % 8 12 5611
30 % 8 12 4918
Entity #3 | Chains: C
HEAT-LABILE ENTEROTOXIN protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 7 12293
95 % 5 7 11851 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 5 7 11674
70 % 5 7 11052
50 % 5 8 9156
40 % 5 8 8302
30 % 5 8 7176

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures