Sequence Similarity Clusters for the Entities in PDB 1LTG

Entity #1 | Chains: D,E,F,G,H
HEAT-LABILE ENTEROTOXIN protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 19 261
95 % 17 22 286 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 47 55 113
70 % 50 58 108
50 % 50 58 140
40 % 50 58 156
30 % 50 58 171
Entity #2 | Chains: A
HEAT-LABILE ENTEROTOXIN protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 54733
95 % 5 7 12096 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 5 7 11910
70 % 7 11 7012
50 % 8 12 6127
40 % 8 12 5703
30 % 8 12 4998
Entity #3 | Chains: C
HEAT-LABILE ENTEROTOXIN protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 7 12585
95 % 5 7 12121 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 5 7 11934
70 % 5 7 11270
50 % 5 8 9327
40 % 5 8 8446
30 % 5 8 7302

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures