Sequence Similarity Clusters for the Entities in PDB 1LTA

Entity #1 | Chains: D,E,F,G,H
HEAT-LABILE ENTEROTOXIN, SUBUNIT B protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 19 256
95 % 13 22 279 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 40 55 90
70 % 43 58 102
50 % 43 58 137
40 % 43 58 152
30 % 43 58 166
Entity #2 | Chains: A
HEAT-LABILE ENTEROTOXIN, SUBUNIT A protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 17773
95 % 3 7 11850 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 3 7 11677
70 % 5 11 6881
50 % 5 12 6034
40 % 5 12 5626
30 % 5 12 4927
Entity #3 | Chains: C
HEAT-LABILE ENTEROTOXIN, SUBUNIT A protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 12321
95 % 3 7 11874 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 3 7 11700
70 % 3 7 11070
50 % 3 8 9177
40 % 3 8 8320
30 % 3 8 7189

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1LTS 3 C HEAT-LABILE ENTEROTOXIN, SUBUNIT A 562
2 1LTI 3 C HEAT LABILE ENTEROTOXIN TYPE I LATENT/INACTIVE FORM 562
3 1LTA 3 C HEAT-LABILE ENTEROTOXIN, SUBUNIT A 562
4 1LTT 3 C HEAT-LABILE ENTEROTOXIN, SUBUNIT A 562
5 1LTG 3 C HEAT-LABILE ENTEROTOXIN 562
6 1XTC 2 C CHOLERA TOXIN 666
7 1LTB 3 C HEAT-LABILE ENTEROTOXIN, SUBUNIT A 562
8 1HTL 3 C HEAT-LABILE ENTEROTOXIN, SUBUNIT A 562