Sequence Similarity Clusters for the Entities in PDB 1LTA

Entity #1 | Chains: D,E,F,G,H
HEAT-LABILE ENTEROTOXIN, SUBUNIT B protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 19 261
95 % 13 22 286 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 40 55 113
70 % 43 58 108
50 % 43 58 140
40 % 43 58 156
30 % 43 58 171
Entity #2 | Chains: A
HEAT-LABILE ENTEROTOXIN, SUBUNIT A protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 18098
95 % 3 7 12071 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 3 7 11889
70 % 5 11 7007
50 % 5 12 6124
40 % 5 12 5698
30 % 5 12 4993
Entity #3 | Chains: C
HEAT-LABILE ENTEROTOXIN, SUBUNIT A protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 12561
95 % 3 7 12096 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 3 7 11913
70 % 3 7 11250
50 % 3 8 9319
40 % 3 8 8438
30 % 3 8 7295

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1LTS 3 C HEAT-LABILE ENTEROTOXIN, SUBUNIT A 562
2 1LTI 3 C HEAT LABILE ENTEROTOXIN TYPE I LATENT/INACTIVE FORM 562
3 1LTA 3 C HEAT-LABILE ENTEROTOXIN, SUBUNIT A 562
4 1LTT 3 C HEAT-LABILE ENTEROTOXIN, SUBUNIT A 562
5 1LTG 3 C HEAT-LABILE ENTEROTOXIN 562
6 1XTC 2 C CHOLERA TOXIN 666
7 1LTB 3 C HEAT-LABILE ENTEROTOXIN, SUBUNIT A 562
8 1HTL 3 C HEAT-LABILE ENTEROTOXIN, SUBUNIT A 562