Sequence Similarity Clusters for the Entities in PDB 1LTA

Entity #1 | Chains: D,E,F,G,H
HEAT-LABILE ENTEROTOXIN, SUBUNIT B protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 19 236
95 % 13 22 261 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 40 55 81
70 % 43 58 88
50 % 43 58 120
40 % 43 58 141
30 % 43 58 154
Entity #2 | Chains: A
HEAT-LABILE ENTEROTOXIN, SUBUNIT A protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 16544
95 % 3 7 11070 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 3 7 10911
70 % 5 11 6457
50 % 5 12 5695
40 % 5 12 5302
30 % 5 12 4676
Entity #3 | Chains: C
HEAT-LABILE ENTEROTOXIN, SUBUNIT A protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 11463
95 % 3 7 11100 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 3 7 10939
70 % 3 7 10360
50 % 3 8 8608
40 % 3 8 7816
30 % 3 8 6769

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2A5D 2 B Cholera enterotoxin, A chain A1 subunit 666 2.4.2.36 | Details
2 1LTS 2 A HEAT-LABILE ENTEROTOXIN, SUBUNIT A 562
3 2A5F 2 B Cholera enterotoxin, A chain Cholera toxin A1 subunit 666 2.4.2.36 | Details
4 1LTI 2 A HEAT LABILE ENTEROTOXIN TYPE I LATENT/INACTIVE FORM 562
5 1LTA 2 A HEAT-LABILE ENTEROTOXIN, SUBUNIT A 562
6 1TII 2 A HEAT LABILE ENTEROTOXIN TYPE IIB LATENT/INACTIVE FORM 562
7 1LTT 2 A HEAT-LABILE ENTEROTOXIN, SUBUNIT A 562
8 1LTG 2 A HEAT-LABILE ENTEROTOXIN 562
9 1XTC 1 A CHOLERA TOXIN 666
10 1LTB 2 A HEAT-LABILE ENTEROTOXIN, SUBUNIT A 562
11 1HTL 2 A HEAT-LABILE ENTEROTOXIN, SUBUNIT A 562
12 2A5G 2 B Cholera enterotoxin, A chain Cholera toxin A1 subunit 666 2.4.2.36 | Details