Sequence Similarity Clusters for the Entities in PDB 1LTA

Entity #1 | Chains: D,E,F,G,H
HEAT-LABILE ENTEROTOXIN, SUBUNIT B protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 19 236
95 % 13 22 261 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 40 55 81
70 % 43 58 88
50 % 43 58 120
40 % 43 58 141
30 % 43 58 154
Entity #2 | Chains: A
HEAT-LABILE ENTEROTOXIN, SUBUNIT A protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 16544
95 % 3 7 11070 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 3 7 10911
70 % 5 11 6457
50 % 5 12 5695
40 % 5 12 5302
30 % 5 12 4676
Entity #3 | Chains: C
HEAT-LABILE ENTEROTOXIN, SUBUNIT A protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 11463
95 % 3 7 11100 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 3 7 10939
70 % 3 7 10360
50 % 3 8 8608
40 % 3 8 7816
30 % 3 8 6769

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1DJR 1 D, E, F, G, H HEAT-LABILE ENTEROTOXIN B PENTAMER 562
2 1EFI 1 D, E, F, G, H PROTEIN (HEAT-LABILE ENTEROTOXIN B CHAIN) 562
3 1LT5 1 D, E, F, G, H HEAT-LABILE ENTEROTOXIN B-PENTAMER 562
4 1EEF 1 D, E, F, G, H, L, M, N, O, P PROTEIN (HEAT-LABILE ENTEROTOXIN B CHAIN) 562
5 1FD7 1 D, E, F, G, H, L, M, N, O, P HEAT-LABILE ENTEROTOXIN B CHAIN 562
6 2XRS 1 D, E, F, G, H, L, M, N, O, P HEAT-LABILE ENTEROTOXIN B CHAIN PORCINE ENTEROTOXIN PLT B SUBUNIT CONTAINS LINEAR NEOLACTOTETRAOSE GAL BETA4 GLCNAC BETA3 GAL BETA4 562
7 1PZI 1 D, E, F, G, H Heat-labile Enterotoxin B subunit 562
8 1LTS 1 D, E, F, G, H HEAT-LABILE ENTEROTOXIN, SUBUNIT B 562
9 1LT3 1 D, E, F, G, H HEAT-LABILE ENTEROTOXIN LACTOSE BOUND HOLOTOXIN 562
10 1LT4 1 D, E, F, G, H HEAT-LABILE ENTEROTOXIN LACTOSE HOLOTOXIN 562
11 1LTI 1 D, E, F, G, H HEAT LABILE ENTEROTOXIN TYPE I LATENT/INACTIVE FORM 562
12 1LTA 1 D, E, F, G, H HEAT-LABILE ENTEROTOXIN, SUBUNIT B 562
13 1LT6 1 D, E, F, G, H, L, M, N, O, P HEAT-LABILE ENTEROTOXIN B-PENTAMER 562
14 1JQY 1 D, E, F, G, H, L, M, N, O, P, V, W, X, Y, Z HEAT-LABILE ENTEROTOXIN B CHAIN 562
15 1LTT 1 D, E, F, G, H HEAT-LABILE ENTEROTOXIN, SUBUNIT B 562
16 1LTG 1 D, E, F, G, H HEAT-LABILE ENTEROTOXIN 562
17 1LTB 1 D, E, F, G, H HEAT-LABILE ENTEROTOXIN, SUBUNIT B 562
18 2XRQ 1 D, E, F, G, H HEAT-LABILE ENTEROTOXIN B CHAIN PORCINE ENTEROTOXIN PLT B-SUBUNIT CONTAINING GM1 PENTASACCHARIDE(GAL-BETA3-GALNAC-BETA4 (NEUAC ALPHA3)-GAL-BETA4 -GLC RESIDUES 22-124 562
19 1HTL 1 D, E, F, G, H HEAT-LABILE ENTEROTOXIN, SUBUNIT B 562