Sequence Similarity Clusters for the Entities in PDB 1LT9

Entity #1 | Chains: A,D
Fibrinogen alpha/alpha-E chain protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 11 2278
95 % 8 11 2921
90 % 8 11 2958
70 % 8 11 2923
50 % 8 11 2880
40 % 8 11 2834
30 % 8 11 2657
Entity #2 | Chains: B,E
Fibrinogen beta chain protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 25 680
95 % 15 28 811
90 % 15 28 842
70 % 15 28 878
50 % 15 30 833
40 % 15 30 872
30 % 29 61 417
Entity #3 | Chains: C,F
Fibrinogen gamma chain protein, length: 311 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 23 727
95 % 15 29 779
90 % 15 29 812
70 % 15 29 847
50 % 15 31 805
40 % 15 31 843
30 % 30 61 417

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures