Sequence Similarity Clusters for the Entities in PDB 1LT9

Entity #1 | Chains: A,D
Fibrinogen alpha/alpha-E chain protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 11 2231
95 % 8 11 2880 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 8 11 2921
70 % 8 11 2883
50 % 8 11 2836
40 % 8 11 2796
30 % 8 11 2617
Entity #2 | Chains: B,E
Fibrinogen beta chain protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 25 666
95 % 15 28 799 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.9
PDBFlex
90 % 15 28 827
70 % 15 28 867
50 % 15 30 827
40 % 15 30 863
30 % 29 61 399
Entity #3 | Chains: C,F
Fibrinogen gamma chain protein, length: 311 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 23 717
95 % 15 29 759 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.1
PDBFlex
90 % 15 29 792
70 % 15 29 835
50 % 15 31 799
40 % 15 31 836
30 % 30 61 399

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.