Sequence Similarity Clusters for the Entities in PDB 1LT9

Entity #1 | Chains: A,D
Fibrinogen alpha/alpha-E chain protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 11 2615
95 % 8 11 2932 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 8 11 2986
70 % 8 11 2938
50 % 8 11 2902
40 % 8 11 2822
30 % 8 11 2606
Entity #2 | Chains: B,E
Fibrinogen beta chain protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 28 688
95 % 15 28 843 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.9
PDBFlex
90 % 15 28 870
70 % 15 28 909
50 % 15 30 867
40 % 15 30 895
30 % 29 61 439
Entity #3 | Chains: C,F
Fibrinogen gamma chain protein, length: 311 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 10 2811
95 % 15 29 800 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.1
PDBFlex
90 % 15 29 827
70 % 15 29 870
50 % 15 31 831
40 % 15 31 863
30 % 30 61 439

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures