Sequence Similarity Clusters for the Entities in PDB 1LSS

Entity #1 | Chains: A,B,C,D
Trk system potassium uptake protein trkA homolog protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 23841
95 % 1 1 20427 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 1 1 19854
70 % 1 1 18293
50 % 1 1 15858
40 % 1 1 14102
30 % 1 1 12059

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures