Sequence Similarity Clusters for the Entities in PDB 1LS5

Entity #1 | Chains: A,B
plasmepsin IV protein, length: 328 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 19059
95 % 1 2 16988 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.8
PDBFlex
90 % 1 2 16657
70 % 21 26 997
50 % 22 29 927
40 % 22 29 956
30 % 695 717 31
Entity #2 | Chains: C,D
Pepstatin protein, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures