Sequence Similarity Clusters for the Entities in PDB 1LS5

Entity #1 | Chains: A,B
plasmepsin IV protein, length: 328 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 18816
95 % 1 2 16792 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 1 2 16457
70 % 21 26 982
50 % 22 29 917
40 % 22 29 942
30 % 695 717 28
Entity #2 | Chains: C,D
Pepstatin protein, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.