Sequence Similarity Clusters for the Entities in PDB 1LS5

Entity #1 | Chains: A,B
plasmepsin IV protein, length: 328 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 18531
95 % 1 2 16527 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.8
PDBFlex
90 % 1 2 16192
70 % 21 26 971
50 % 22 29 906
40 % 22 29 932
30 % 691 712 29
Entity #2 | Chains: C,D
Pepstatin protein, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.