Sequence Similarity Clusters for the Entities in PDB 1LRW

Entity #1 | Chains: A,C
methanol dehydrogenase subunit 1 protein, length: 600 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 31396
95 % 1 1 25790 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 1.0
PDBFlex
90 % 1 1 24918
70 % 5 6 2919
50 % 11 12 1743
40 % 11 12 1745
30 % 12 13 1610
Entity #2 | Chains: B,D
methanol dehydrogenase subunit 2 protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 48143
95 % 1 1 35962 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 1 34337
70 % 1 1 30517
50 % 1 1 26087
40 % 1 1 23003
30 % 1 1 19486

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures