Sequence Similarity Clusters for the Entities in PDB 1LRR

Entity #1 | Chains: B,E
5'-D(*CP*AP*CP*CP*GP*AP*TP*CP*GP*AP*CP*T)-3' dna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C,F
5'-D(*AP*GP*TP*CP*GP*(6MA)P*TP*CP*GP*GP*TP*G)-3' dna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,D
SeqA protein protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 43622
95 % 1 1 32772 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 1 31363
70 % 1 1 28040
50 % 1 1 23978
40 % 1 1 21092
30 % 1 1 17846

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.