Sequence Similarity Clusters for the Entities in PDB 1LQW

Entity #1 | Chains: A,B
PEPTIDE DEFORMYLASE PDF1 protein, length: 183 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 13437
95 % 5 9 6007 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 5 9 6013
70 % 5 9 5871
50 % 26 37 1352
40 % 26 37 1358
30 % 62 122 233

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures