Sequence Similarity Clusters for the Entities in PDB 1LQS

Entity #1 | Chains: R,S
INTERLEUKIN-10 RECEPTOR ALPHA CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 12583
95 % 3 5 12020 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.8
PDBFlex
90 % 3 5 11844
70 % 3 5 11185
50 % 3 5 10027
40 % 3 5 9076
30 % 3 5 7799
Entity #2 | Chains: L,M
INTERLEUKIN-10-LIKE PROTEIN protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 45093
95 % 1 1 37598 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.4
PDBFlex
90 % 1 1 35865
70 % 1 1 31864
50 % 1 1 27109
40 % 1 1 23791
30 % 1 1 19818

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures