Sequence Similarity Clusters for the Entities in PDB 1LQM

Entity #1 | Chains: A,C,E,G
URACIL-DNA GLYCOSYLASE protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 6 3415
95 % 11 13 2532
90 % 11 13 2584
70 % 12 14 2422
50 % 39 43 834
40 % 66 71 516
30 % 67 72 516
Entity #2 | Chains: B,D,F,H
URACIL-DNA GLYCOSYLASE INHIBITOR protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 12 898
95 % 10 12 1229
90 % 10 12 1255
70 % 10 12 1282
50 % 10 12 1327
40 % 10 12 1341
30 % 10 12 1319

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.