Sequence Similarity Clusters for the Entities in PDB 1LQM

Entity #1 | Chains: A,C,E,G
URACIL-DNA GLYCOSYLASE protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 3739
95 % 11 13 2745 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.8
PDBFlex
90 % 11 13 2798
70 % 12 14 2631
50 % 39 43 894
40 % 66 71 562
30 % 67 72 552
Entity #2 | Chains: B,D,F,H
URACIL-DNA GLYCOSYLASE INHIBITOR protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 12 981
95 % 10 12 1329 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 0.8
PDBFlex
90 % 10 12 1353
70 % 10 12 1372
50 % 10 12 1422
40 % 10 12 1431
30 % 10 12 1408

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures