Sequence Similarity Clusters for the Entities in PDB 1LQM

Entity #1 | Chains: A,C,E,G
URACIL-DNA GLYCOSYLASE protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 3658
95 % 11 13 2693 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.8
PDBFlex
90 % 11 13 2744
70 % 12 14 2575
50 % 39 43 874
40 % 66 71 549
30 % 67 72 544
Entity #2 | Chains: B,D,F,H
URACIL-DNA GLYCOSYLASE INHIBITOR protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 12 959
95 % 10 12 1300 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 0.8
PDBFlex
90 % 10 12 1326
70 % 10 12 1347
50 % 10 12 1396
40 % 10 12 1404
30 % 10 12 1381

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.