Sequence Similarity Clusters for the Entities in PDB 1LQM

Entity #1 | Chains: A,C,E,G
URACIL-DNA GLYCOSYLASE protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 3796
95 % 11 13 2789 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.8
PDBFlex
90 % 11 13 2842
70 % 12 14 2666
50 % 39 43 903
40 % 68 74 540
30 % 69 75 532
Entity #2 | Chains: B,D,F,H
URACIL-DNA GLYCOSYLASE INHIBITOR protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 12 999
95 % 10 12 1350 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 0.8
PDBFlex
90 % 10 12 1372
70 % 10 12 1386
50 % 10 12 1438
40 % 10 12 1445
30 % 10 12 1429

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures