Sequence Similarity Clusters for the Entities in PDB 1LQG

Entity #1 | Chains: A,B
URACIL-DNA GLYCOSYLASE protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 3792
95 % 10 13 2784 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.8
PDBFlex
90 % 10 13 2838
70 % 11 14 2664
50 % 36 43 901
40 % 65 74 539
30 % 66 75 529
Entity #2 | Chains: C,D
URACIL-DNA GLYCOSYLASE INHIBITOR protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 12 998
95 % 9 12 1348 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 0.8
PDBFlex
90 % 9 12 1370
70 % 9 12 1384
50 % 9 12 1436
40 % 9 12 1442
30 % 9 12 1426

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures