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Crystal structure of a hydroxylated HIF-1 alpha peptide bound to the pVHL/elongin-C/elongin-B complex
Sequence Clustering and Redundancy Reduction Results
1LQB
Sequence Clusters for the Sequence Entities in PDB 1LQB
Entity #1: Chains: A - Elongin B protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 18 709
95% 5 20 926
90% 5 20 951
70% 5 20 985
50% 5 20 1025
40% 5 20 1047
30% 5 20 1028
Entity #2: Chains: B - Elongin C protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 35 197
95% 7 36 279
90% 7 36 291
70% 7 36 310
50% 7 36 337
40% 7 36 365
30% 7 37 365
Entity #3: Chains: C - von hippel-lindau disease tumor supressor protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 24 243
95% 4 24 344
90% 4 24 367
70% 4 24 390
50% 4 24 430
40% 4 24 461
30% 4 24 466
Entity #4: Chains: D - Hypoxia-inducible factor 1 ALPHA protein, length: 34 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 60305
95% 1 1 42261
90% 1 1 40361
70% 1 1 35812
50% 1 1 30795
40% 1 1 27218
30% 1 1 23103
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.