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An Information Portal to 105212 Biological Macromolecular Structures

Crystal structure of a hydroxylated HIF-1 alpha peptide bound to the pVHL/elongin-C/elongin-B complex
Sequence Clustering and Redundancy Reduction Results
1LQB
Sequence Clusters for the Sequence Entities in PDB 1LQB
Entity #1: Chains: A - Elongin B protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 17 679
95% 5 19 890
90% 5 19 913
70% 5 19 952
50% 5 19 998
40% 5 19 1030
30% 5 19 1001
Entity #2: Chains: B - Elongin C protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 34 184
95% 7 35 259
90% 7 35 270
70% 7 35 292
50% 7 35 326
40% 7 35 350
30% 7 36 359
Entity #3: Chains: C - von hippel-lindau disease tumor supressor protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 24 236
95% 4 24 332
90% 4 24 352
70% 4 24 377
50% 4 24 411
40% 4 24 439
30% 4 24 455
Entity #4: Chains: D - Hypoxia-inducible factor 1 ALPHA protein, length: 34 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 58004
95% 1 1 40723
90% 1 1 38934
70% 1 1 34615
50% 1 1 29803
40% 1 1 26355
30% 1 1 22386
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.