Sequence Similarity Clusters for the Entities in PDB 1LQB

Entity #1 | Chains: A
Elongin B protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 18 954
95 % 5 20 1216 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 5 20 1243
70 % 5 20 1275
50 % 5 20 1334
40 % 5 20 1344
30 % 5 20 1321
Entity #2 | Chains: B
Elongin C protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 47 184
95 % 8 48 245 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 8 48 261
70 % 8 48 295
50 % 8 48 344
40 % 8 48 362
30 % 8 49 362
Entity #3 | Chains: C
von hippel-lindau disease tumor supressor protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 35 221
95 % 5 35 310 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.5
PDBFlex
90 % 5 35 324
70 % 5 35 373
50 % 5 35 434
40 % 5 35 454
30 % 5 35 451
Entity #4 | Chains: D
Hypoxia-inducible factor 1 ALPHA protein, length: 34 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 75514
95 % 1 1 52577
90 % 1 1 49843
70 % 1 1 43613
50 % 1 1 37185
40 % 1 1 32753
30 % 1 1 27745

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures