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Crystal structure of a hydroxylated HIF-1 alpha peptide bound to the pVHL/elongin-C/elongin-B complex
Sequence Clustering and Redundancy Reduction Results
1LQB
Sequence Clusters for the Sequence Entities in PDB 1LQB
Entity #1: Chains: A - Elongin B protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 17 702
95% 5 19 923
90% 5 19 946
70% 5 19 980
50% 5 19 1024
40% 5 19 1051
30% 5 19 1027
Entity #2: Chains: B - Elongin C protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 34 194
95% 7 35 272
90% 7 35 284
70% 7 35 303
50% 7 35 340
40% 7 35 364
30% 7 36 363
Entity #3: Chains: C - von hippel-lindau disease tumor supressor protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 24 238
95% 4 24 337
90% 4 24 357
70% 4 24 383
50% 4 24 421
40% 4 24 449
30% 4 24 462
Entity #4: Chains: D - Hypoxia-inducible factor 1 ALPHA protein, length: 34 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 59179
95% 1 1 41469
90% 1 1 39633
70% 1 1 35218
50% 1 1 30289
40% 1 1 26785
30% 1 1 22740
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.