Sequence Similarity Clusters for the Entities in PDB 1LQB

Entity #1 | Chains: A
Elongin B protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 21 964
95 % 5 21 1173 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 5 21 1196
70 % 5 21 1231
50 % 5 21 1283
40 % 5 21 1278
30 % 5 21 1275
Entity #2 | Chains: B
Elongin C protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 52 186
95 % 8 52 238 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 8 52 247
70 % 8 52 278
50 % 8 52 311
40 % 8 53 341
30 % 8 53 346
Entity #3 | Chains: C
von hippel-lindau disease tumor supressor protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 38 222
95 % 5 38 286 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.5
PDBFlex
90 % 5 38 297
70 % 5 38 344
50 % 5 38 412
40 % 5 38 437
30 % 5 38 447
Entity #4 | Chains: D
Hypoxia-inducible factor 1 ALPHA protein, length: 34 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 50031
95 % 1 1 38502
90 % 1 1 36727
70 % 1 1 32599
50 % 1 1 27695
40 % 1 1 24292
30 % 1 1 22772

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures