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Crystal structure of a hydroxylated HIF-1 alpha peptide bound to the pVHL/elongin-C/elongin-B complex
Sequence Clustering and Redundancy Reduction Results
1LQB
Sequence Clusters for the Sequence Entities in PDB 1LQB
Entity #1: Chains: A - Elongin B protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 17 599
95% 5 19 806
90% 5 19 831
70% 5 19 868
50% 5 19 925
40% 5 19 953
30% 5 19 934
Entity #2: Chains: B - Elongin C protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 34 178
95% 7 35 243
90% 7 35 253
70% 7 35 277
50% 7 35 309
40% 7 35 335
30% 7 36 343
Entity #3: Chains: C - von hippel-lindau disease tumor supressor protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 24 234
95% 4 24 326
90% 4 24 342
70% 4 24 367
50% 4 24 402
40% 4 24 427
30% 4 24 440
Entity #4: Chains: D - Hypoxia-inducible factor 1 ALPHA protein, length: 34 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 56981
95% 1 1 40011
90% 1 1 38274
70% 1 1 34097
50% 1 1 29373
40% 1 1 25964
30% 1 1 22049
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.