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Crystal structure of a hydroxylated HIF-1 alpha peptide bound to the pVHL/elongin-C/elongin-B complex
Sequence Clustering and Redundancy Reduction Results
1LQB
Sequence Clusters for the Sequence Entities in PDB 1LQB
Entity #1: Chains: A - Elongin B protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 18 701
95% 5 20 918
90% 5 20 944
70% 5 20 979
50% 5 20 1020
40% 5 20 1042
30% 5 20 1022
Entity #2: Chains: B - Elongin C protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 35 196
95% 7 36 276
90% 7 36 288
70% 7 36 308
50% 7 36 336
40% 7 36 362
30% 7 37 362
Entity #3: Chains: C - von hippel-lindau disease tumor supressor protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 24 242
95% 4 24 340
90% 4 24 361
70% 4 24 387
50% 4 24 426
40% 4 24 455
30% 4 24 465
Entity #4: Chains: D - Hypoxia-inducible factor 1 ALPHA protein, length: 34 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 60070
95% 1 1 42108
90% 1 1 40223
70% 1 1 35699
50% 1 1 30704
40% 1 1 27142
30% 1 1 23044
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.