Sequence Similarity Clusters for the Entities in PDB 1LQB

Entity #1 | Chains: A
Elongin B protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 18 918
95 % 5 20 1174 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 5 20 1201
70 % 5 20 1237
50 % 5 20 1291
40 % 5 20 1305
30 % 5 20 1280
Entity #2 | Chains: B
Elongin C protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 47 171
95 % 8 48 230 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 8 48 245
70 % 8 48 278
50 % 8 48 312
40 % 8 48 329
30 % 8 49 335
Entity #3 | Chains: C
von hippel-lindau disease tumor supressor protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 35 212
95 % 5 35 295 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.5
PDBFlex
90 % 5 35 306
70 % 5 35 353
50 % 5 35 415
40 % 5 35 442
30 % 5 35 442
Entity #4 | Chains: D
Hypoxia-inducible factor 1 ALPHA protein, length: 34 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 73579
95 % 1 1 51329
90 % 1 1 48726
70 % 1 1 42699
50 % 1 1 36426
40 % 1 1 32100
30 % 1 1 27197

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.